Evidence map›Paper›PMID 35655135›Full record

ArticleBMC plant biology2022

Comprehensive analysis of cucumber C-repeat/dehydration-responsive element binding factor family genes and their potential roles in cold tolerance of cucumber.

Jialin Li, Hongmei Li, Xiaoyan Quan, Qiuli Shan, Wenbo Wang, Ning Yin, Siqi Wang, Zenghui Wang, Wenxing He

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  10. Genome-Wide Analysis ofPlants (Basel, Switzerland) · 2024
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  12. Identification ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
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  14. PgMYB1 Positively Regulates Anthocyanin Accumulation by ActivatingInternational journal of molecular sciences · 2023
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  15. Article
  16. Comprehensive analysis of cucumberFrontiers in plant science · 2023
    Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jialin LiSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Hongmei LiSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Xiaoyan QuanSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Qiuli ShanSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Wenbo WangSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Ning YinSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Siqi WangSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China.
Zenghui WangShandong Institute of Pomology, Tai'an, Shandong, 271000, China. 374141645@qq.com.
Wenxing HeSchool of Biological Science and Technology, University of Jinan, Jinan, 250022, China. 163.hwx@163.com.
University of Jinan · CNInstitute of Pomology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCold stress is one of the main abiotic stresses limiting cucumber (Cucumis sativus L.) growth and production. C-repeat binding factor/Dehydration responsive element-binding 1 protein (CBF/DREB1), containing conserved APETALA2 (AP2) DNA binding domains and two characteristic sequences, are key signaling genes that can be rapidly induced and play vital roles in plant response to low temperature. However, the CBF family has not been systematically elucidated in cucumber, and the expression pattern of this family genes under cold stress remains unclear.

resultsIn this study, three CsCBF family genes were identified in cucumber genome and their protein conserved domain, protein physicochemical properties, gene structure and phylogenetic analysis were further comprehensively analyzed. Subcellular localization showed that all three CsCBFs were localized in the nucleus. Cis-element analysis of the promoters indicated that CsCBFs might be involved in plant hormone response and abiotic stress response. Expression analysis showed that the three CsCBFs could be significantly induced by cold stress, salt and ABA. The overexpression of CsCBFs in cucumber seedlings enhanced the tolerance to cold stress, and importantly, the transcript levels of CsCOR genes were significantly upregulated in 35S:CsCBFs transgenic plants after cold stress treatment. Biochemical analyses ascertained that CsCBFs directly activated CsCOR genes expression by binding to its promoter, thereby enhancing plant resistance to cold stress.

conclusionThis study provided a foundation for further research on the function of CsCBF genes in cold stress resistance and elucidating its mechanism.

Indexed as

Cucumis sativusCold-Shock ResponseDehydrationGene Expression Regulation, PlantPhylogenyPlant ProteinsPlants, Genetically ModifiedTranscription FactorsPlant ProteinsTranscription FactorsCBF familyCold toleranceCucumberExpression patternsTranscriptional regulation

Identifiers

PMID35655135
PMCPMC9161515
OpenAlexW4281659946

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.