Evidence map›Paper›PMID 35654847›Full record

ArticleNature chemical biology2022

A dimeric proteomimetic prevents SARS-CoV-2 infection by dimerizing the spike protein.

Bhavesh Khatri, Ishika Pramanick, Sameer Kumar Malladi, Raju S Rajmani, Sahil Kumar, Pritha Ghosh, Nayanika Sengupta, R Rahisuddin, Narender Kumar, S Kumaran and 4 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  5. Article
  6. Interplay between CChembiochem : a European journal of chemical biology · 2025
    Article
  7. Self-assembled proteomimetic (SAP) with antibody-like binding from short PNA-peptide conjugates.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Structure-guided engineering of a mutation-tolerant inhibitor peptide against variable SARS-CoV-2 spikes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Bhavesh KhatriMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.ORCID http://orcid.org/0000-0002-3603-7839
Ishika Pramanick *Molecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
Sameer Kumar Malladi *Molecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
Raju S RajmaniMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
Sahil KumarVirology Unit, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India.
Pritha GhoshMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
Nayanika SenguptaMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
R RahisuddinInstitute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India.
Narender KumarInstitute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India.
S KumaranInstitute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India.
Rajesh P RingeVirology Unit, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Chandigarh, India.
Raghavan VaradarajanMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India.
Somnath DuttaMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India. somnath@iisc.ac.in.ORCID http://orcid.org/0000-0002-3181-0108
Jayanta ChatterjeeMolecular Biophysics Unit (MBU), Indian Institute of Science, Bangalore, India. jayanta@iisc.ac.in.ORCID http://orcid.org/0000-0002-4124-7339

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein tertiary structure mimetics are valuable tools to target large protein-protein interaction interfaces. Here, we demonstrate a strategy for designing dimeric helix-hairpin motifs from a previously reported three-helix-bundle miniprotein that targets the receptor-binding domain (RBD) of severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2). Through truncation of the third helix and optimization of the interhelical loop residues of the miniprotein, we developed a thermostable dimeric helix-hairpin. The dimeric four-helix bundle competes with the human angiotensin-converting enzyme 2 (ACE2) in binding to RBD with 2:2 stoichiometry. Cryogenic-electron microscopy revealed the formation of dimeric spike ectodomain trimer by the four-helix bundle, where all the three RBDs from either spike protein are attached head-to-head in an open conformation, revealing a novel mechanism for virus neutralization. The proteomimetic protects hamsters from high dose viral challenge with replicative SARS-CoV-2 viruses, demonstrating the promise of this class of peptides that inhibit protein-protein interaction through target dimerization.

Indexed as

Angiotensin-Converting Enzyme 2COVID-19DimerizationHumansPeptidesPeptidyl-Dipeptidase AProtein BindingSARS-CoV-2Spike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2PeptidesPeptidyl-Dipeptidase ASpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID35654847
PMCPMC9512702

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LicenceCC BY
Read underepoch 390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.