Evidence map›Paper›PMID 35654042›Full record

ArticleMolecular cell2022

Structural basis of transposon end recognition explains central features of Tn7 transposition systems.

Zuzanna Kaczmarska, Mariusz Czarnocki-Cieciura, Karolina M Górecka-Minakowska, Robert J Wingo, Justyna Jackiewicz, Weronika Zajko, Jarosław T Poznański, Michał Rawski, Timothy Grant, Joseph E Peters and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Zuzanna KaczmarskaLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Mariusz Czarnocki-CieciuraLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Karolina M Górecka-MinakowskaLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Robert J WingoDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Justyna JackiewiczLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Weronika ZajkoLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland.
Jarosław T PoznańskiInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, 02-106 Warsaw, Poland.
Michał RawskiMalopolska Centre of Biotechnology, Jagiellonian University, 30-387 Krakow, Poland.
Timothy GrantJohn and Jeanne Rowe Center for Research in Virology, Morgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA. Electronic address: joe.peters@cornell.edu.
Marcin NowotnyLaboratory of Protein Structure, International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland. Electronic address: mnowotny@iimcb.gov.pl.
International Institute of Molecular and Cell Biology · PLCornell University · USInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLJagiellonian University · PLUniversity of Wisconsin–Madison · US

Funding

CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM129118
6 · The paper itself

Abstract

Tn7 is a bacterial transposon with relatives containing element-encoded CRISPR-Cas systems mediating RNA-guided transposon insertion. Here, we present the 2.7 Å cryoelectron microscopy structure of prototypic Tn7 transposase TnsB interacting with the transposon end DNA. When TnsB interacts across repeating binding sites, it adopts a beads-on-a-string architecture, where the DNA-binding and catalytic domains are arranged in a tiled and intertwined fashion. The DNA-binding domains form few base-specific contacts leading to a binding preference that requires multiple weakly conserved sites at the appropriate spacing to achieve DNA sequence specificity. TnsB binding imparts differences in the global structure of the protein-bound DNA ends dictated by the spacing or overlap of binding sites explaining functional differences in the left and right ends of the element. We propose a model of the strand-transfer complex in which the terminal TnsB molecule is rearranged so that its catalytic domain is in a position conducive to transposition.

Indexed as

Escherichia coli ProteinsBacterial ProteinsCryoelectron MicroscopyDNA, BacterialDNA-Binding ProteinsDNA Transposable ElementsEscherichia coliBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA Transposable ElementsEscherichia coli ProteinsCASTTn7 transposonTnsBtransposasetransposition

Identifiers

PMID35654042
PMCPMC9308760
OpenAlexW4281632318

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.