Evidence map›Paper›PMID 35652307›Full record

ArticleAntimicrobial agents and chemotherapy2022

Comparative Transcriptomics Reveal Possible Mechanisms of Amphotericin B Resistance in Candida auris.

Raju Shivarathri, Sabrina Jenull, Manju Chauhan, Ashutosh Singh, Rounik Mazumdar, Anuradha Chowdhary, Karl Kuchler, Neeraj Chauhan

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  6. Microbiology and molecular biology reviews : MMBR · 2026
    Review
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  13. Comprehensive Insights into Sugar Transporters ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  14. Resistance gene mutations and phylogenetic relationships inFrontiers in cellular and infection microbiology · 2026
    Article
  15. Functional characterization ofFrontiers in microbiology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Raju ShivarathriPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.
Sabrina JenullDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Campus Vienna Biocenter, Medical University of Viennagrid.22937.3d, Vienna, Austria.
Manju ChauhanPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.
Ashutosh SinghMedical Mycology Unit, Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi, India.
Rounik MazumdarDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Campus Vienna Biocenter, Medical University of Viennagrid.22937.3d, Vienna, Austria.
Anuradha ChowdharyMedical Mycology Unit, Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi, India.
Karl KuchlerDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Campus Vienna Biocenter, Medical University of Viennagrid.22937.3d, Vienna, Austria.
Neeraj ChauhanPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.ORCID 0000-0002-9252-9897
Rutgers, The State University of New Jersey · USMax Perutz Labs · ATUniversity of Delhi · INUniversity of Veterinary Medicine Vienna · AT

Funding

The Candida albicans acetylome in fungal virulenceR01AI124499 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI CHAUHAN, NEERAJ · 2016 to 2019
$1.6M
Austrian Science Fund FWF P 32582Austrian Science Fund FWF P 33425NIAID NIH HHS R01 AI124499
6 · The paper itself

Abstract

Candida auris is an emerging multidrug-resistant human fungal pathogen often refractory to treatment by all classes of antifungal drugs. Amphotericin B (AmB) is a fungicidal drug that, despite its toxic side effects, remains a drug of choice for the treatment of drug-resistant fungal infections, including those caused by C. auris. However, the molecular mechanisms underlying AmB resistance are poorly understood. In this study, we present data that suggests membrane lipid alterations and chromatin modifications are critical processes that may contribute to or cause adaptive AmB resistance in clinical C. auris isolates. To determine the plausible cause of increased AmB resistance, we performed RNA-seq of AmB-resistant and sensitive C. auris isolates. Remarkably, AmB-resistant strains show a pronounced enrichment of genes involved in lipid and ergosterol biosynthesis, adhesion, drug transport as well as chromatin remodeling. The transcriptomics data confirm increased adhesion and reduced lipid membrane permeability of AmB-resistant strains compared to the sensitive isolates. The AmB-resistant strains also display hyper-resistance to cell wall perturbing agents, including Congo red, calcofluor white and caffeine. Additionally, we noticed an increased phosphorylation of Mkc1 cell integrity MAP kinase upon AmB treatment. Collectively, these data identify differences in the transcriptional landscapes of AmB-resistant versus AmB-sensitive isolates and provide a framework for the mechanistic understanding of AmB resistance in C. auris.

Indexed as

Amphotericin BCandidiasisAntifungal AgentsCandidaCandida aurisDrug Resistance, FungalHumansLipidsMicrobial Sensitivity TestsTranscriptomeAmphotericin BAntifungal AgentsLipidsamphotericin BCandida aurisMAP kinasesmultidrug resistancestress response

Identifiers

PMID35652307
PMCPMC9211394
OpenAlexW4281996461

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.