Evidence map›Paper›PMID 35651721›Full record

ArticleFrontiers in neuroinformatics2022

The Case for Optimized Edge-Centric Tractography at Scale.

Joseph Y Moon, Pratik Mukherjee, Ravi K Madduri, Amy J Markowitz, Lanya T Cai, Eva M Palacios, Geoffrey T Manley, Peer-Timo Bremer

Abstract read
In one paragraph

Article in Frontiers in neuroinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joseph Y MoonLawrence Livermore National Laboratory, Livermore, CA, United States.
Pratik MukherjeeDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.
Ravi K MadduriArgonne National Laboratory, Lemont, IL, United States.
Amy J MarkowitzDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.
Lanya T CaiDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.
Eva M PalaciosDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.
Geoffrey T ManleyDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.
Peer-Timo BremerLawrence Livermore National Laboratory, Livermore, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The anatomic validity of structural connectomes remains a significant uncertainty in neuroimaging. Edge-centric tractography reconstructs streamlines in bundles between each pair of cortical or subcortical regions. Although edge bundles provides a stronger anatomic embedding than traditional connectomes, calculating them for each region-pair requires exponentially greater computation. We observe that major speedup can be achieved by reducing the number of streamlines used by probabilistic tractography algorithms. To ensure this does not degrade connectome quality, we calculate the identifiability of edge-centric connectomes between test and re-test sessions as a proxy for information content. We find that running PROBTRACKX2 with as few as 1 streamline per voxel per region-pair has no significant impact on identifiability. Variation in identifiability caused by streamline count is overshadowed by variation due to subject demographics. This finding even holds true in an entirely different tractography algorithm using MRTrix. Incidentally, we observe that Jaccard similarity is more effective than Pearson correlation in calculating identifiability for our subject population.

Indexed as

connectomesdiffusion MRIedge-centricEDIidentifiabilityoptimizationtractography

Identifiers

PMID35651721
PMCPMC9148990

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.