Evidence map›Paper›PMID 35650630›Full record

ArticleWorld journal of surgical oncology2022

Collective analysis of the expression and prognosis for LEM-domain proteins in prostate cancer.

Tianzhen He, Yulian Zhang, Xueyu Li, Caihong Liu, Guanqun Zhu, Xinbao Yin, Zongliang Zhang, Kai Zhao, Zhenlin Wang, Peng Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in World journal of surgical oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Tianzhen He *Institute of Special Environmental Medicine, Nantong University, Nantong, 226019, China. sailing198562@ntu.edu.cn.ORCID http://orcid.org/0000-0001-7873-853X
Yulian Zhang *Department of Gynecology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Xueyu Li *Department of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Caihong LiuWestern Administrative Office Center, Qingdao West Coast New District Health Bureau, No. 166 Shuangzhu Road, Huangdao District, Qingdao, 266000, Shandong Province, China.
Guanqun ZhuDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Xinbao YinDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Zongliang ZhangDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Kai ZhaoDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Zhenlin WangDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China.
Peng ZhaoFaculty of Sport Science and Coaching, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak Darul Ridzuan, Malaysia. peng.zhao@dukekunshan.edu.cn.
Ke WangDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao University, No. 16 Jiangsu Road, Shinan District, Qingdao, 266000, Shandong Province, China. wangke@qdu.edu.cn.
Qingdao University · CNNantong University · CNSultan Idris Education University · MY

Funding

Large Instruments Open Foundation of Nantong University KFJN2279Natural Science Foundation of Jilin Province 82100557Natural Science Foundation of Nantong JC2021018
6 · The paper itself

Abstract

backgroundMammalian LEM-domain proteins (LEMs) are encoded by seven genes, including LAP2, EMD, LEMD1, LEMD2, LEMD3, ANKLE1, and ANKLE2. Though some LEMs were involved in various tumor progression, the expression and prognostic values of LEMs in prostate adenocarcinoma (PRAD) have yet to be analyzed.

methodsHerein, we investigated the expression, survival data, and immune infiltration levels of LEMs in PRAD patients from ATCG, TIMER, LinkedOmics, and TISIDB databases. We also further validated the mRNA and protein expression levels of ANKLE1, EMD, and LEMD2 in human prostate tumor specimens by qPCR, WB, and IHC.

resultsWe found that all LEM expressions, except for that of LAP2, were markedly altered in PRAD compared to the normal samples. Among all LEMs, only the expressions of ANKLE1, EMD, and LEMD2 were correlated with advanced tumor stage and survival prognosis in PRAD. Consistent with the predicted computational results, the mRNA and protein expression levels of these genes were markedly increased in the PRAD group. We then found that ANKLE1, EMD, and LEMD2 expressions were markedly correlated with immune cell infiltration levels. High ANKLE1, EMD, and LEMD2 expressions predicted a worse prognosis in PRAD based on immune cells. DNA methylation or/and copy number variations may contribute to the abnormal upregulation of ANKLE1, EMD, and LEMD2 in PRAD.

conclusionsTaken together, this study implied that ANKLE1, EMD, and LEMD2 were promising prognosis predictors and potential immunotherapy targets for PRAD patients.

Indexed as

DNA Copy Number VariationsProstatic NeoplasmsEndonucleasesHumansMaleMembrane ProteinsNuclear ProteinsPrognosisProstateRNA, MessengerANKLE1 protein, humanEndonucleasesLEMD2 protein, humanMembrane ProteinsNuclear ProteinsRNA, MessengerGene mutationsImmune infiltrationLEM-domain proteinsProstate adenocarcinomaSurvival prognosis

Identifiers

PMID35650630
PMCPMC9161513
OpenAlexW4281773278

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.