Evidence map›Paper›PMID 35649364›Full record

ArticleCell reports2022

Caulobacter lipid A is conditionally dispensable in the absence of fur and in the presence of anionic sphingolipids.

Justin J Zik, Sung Hwan Yoon, Ziqiang Guan, Gabriele Stankeviciute Skidmore, Ridhi R Gudoor, Karen M Davies, Adam M Deutschbauer, David R Goodlett, Eric A Klein, Kathleen R Ryan

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. LPS in gram-negative bacterial growth and physiology: outside but fully integrated.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. Article
  4. An N4-likeJournal of bacteriology · 2026
    Article
  5. TheJournal of bacteriology · 2026
    Article
  6. A conserved hub protein required for peptidoglycan remodeling and cell division inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Sphingolipid-mediated vesiculation in multidrug-resistantApplied and environmental microbiology · 2025
    Article
  8. An N4-likebioRxiv : the preprint server for biology · 2025
    Article
  9. A co-conserved gene pair supportsJournal of bacteriology · 2025
    Article
  10. A co-conserved gene pair supportsbioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
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  15. Article
  16. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Justin J ZikDepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Sung Hwan YoonDepartment of Microbial Pathogenesis, University of Maryland School of Dentistry, Baltimore, MD 21201, USA.
Ziqiang GuanDepartment of Biochemistry, Duke University Medical Center, Durham, NC 27710, USA.
Gabriele Stankeviciute SkidmoreCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ 08102, USA; Rutgers Center for Lipid Research, Rutgers University, New Brunswick, NJ 08901, USA.
Ridhi R GudoorMolecular Biosciences and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Karen M DaviesMolecular Biosciences and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Adam M DeutschbauerEnvironmental Genomics & Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
David R GoodlettDepartment of Microbial Pathogenesis, University of Maryland School of Dentistry, Baltimore, MD 21201, USA; Department of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8W 2Y2, Canada; University of Victoria-Genome BC Proteomics Centre, Victoria, BC V8Z 7X8, Canada.
Eric A KleinCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ 08102, USA; Biology Department, Rutgers University-Camden, Camden, NJ 08102, USA; Rutgers Center for Lipid Research, Rutgers University, New Brunswick, NJ 08901, USA.
Kathleen R RyanDepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Environmental Genomics & Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: krr@berkeley.edu.
Lawrence Berkeley National Laboratory · USRutgers, The State University of New Jersey · USUniversity of Maryland, Baltimore · USDuke Medical Center · USUniversity of California, Berkeley · US

Funding

MS Diagnostic Bacterial Identification LibraryR01AI147314 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI ERNST, ROBERT K, GOODLETT, DAVID ROBINSON · 2020 to 2024
$2.3M
Protection Against Gram-Negative Sepsis Conferred by Lipid A-Based Structural VariantsR01AI123820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI ERNST, ROBERT K, GOODLETT, DAVID ROBINSON · 2016 to 2019
$1.5M
MS diagnostic bacterial identification libraryR01GM111066 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI ERNST, ROBERT K, GOODLETT, DAVID ROBINSON · 2014 to 2017
$1.2M
NIAID NIH HHS R01 AI123820NIAID NIH HHS R01 AI147314NIGMS NIH HHS R01 GM111066
6 · The paper itself

Abstract

Lipid A, the membrane-anchored portion of lipopolysaccharide (LPS), is an essential component of the outer membrane (OM) of nearly all Gram-negative bacteria. Here we identify regulatory and structural factors that together render lipid A nonessential in Caulobacter crescentus. Mutations in the ferric uptake regulator fur allow Caulobacter to survive in the absence of either LpxC, which catalyzes an early step of lipid A synthesis, or CtpA, a tyrosine phosphatase homolog we find is needed for wild-type lipid A structure and abundance. Alterations in Fur-regulated processes, rather than iron status per se, underlie the ability to survive when lipid A synthesis is blocked. Fitness of lipid A-deficient Caulobacter requires an anionic sphingolipid, ceramide phosphoglycerate (CPG), which also mediates sensitivity to the antibiotic colistin. Our results demonstrate that, in an altered regulatory landscape, anionic sphingolipids can support the integrity of a lipid A-deficient OM.

Indexed as

CaulobacterCaulobacter crescentusLipid ALipopolysaccharidesSphingolipidsLipid ALipopolysaccharidesSphingolipidsCaulobacterceramideCP: MicrobiologyFurironlipid Alipopolysaccharideouter membranesphingolipid

Identifiers

PMID35649364
PMCPMC9393093
OpenAlexW4281770506

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.