Evidence map›Paper›PMID 35648852›Full record

ArticleScience advances2022

A systems biology approach identifies candidate drugs to reduce mortality in severely ill patients with COVID-19.

Vinicius M Fava, Mathieu Bourgey, Pubudu M Nawarathna, Marianna Orlova, Pauline Cassart, Donald C Vinh, Matthew Pellan Cheng, Guillaume Bourque, Erwin Schurr, David Langlais

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Potential mechanisms for lung fibrosis associated with COVID-19 infection.QJM : monthly journal of the Association of Physicians · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Vinicius M FavaInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0001-9142-1713
Mathieu BourgeyCanadian Centre for Computational Genomics, McGill University, Montréal, QC, Canada.ORCID 0000-0002-8432-834X
Pubudu M NawarathnaCanadian Centre for Computational Genomics, McGill University, Montréal, QC, Canada.ORCID 0000-0002-9507-6205
Marianna OrlovaInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0002-8108-938X
Pauline CassartInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0002-9985-1571
Donald C VinhInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0003-1347-7767
Matthew Pellan ChengInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.
Guillaume BourqueCanadian Centre for Computational Genomics, McGill University, Montréal, QC, Canada.ORCID 0000-0002-3933-9656
Erwin SchurrInfectious Diseases and Immunity in Global Health Program, The Research Institute of the McGill University Health Centre, Montreal, QC, Canada.ORCID 0000-0002-2640-536X
David LanglaisDepartment for Human Genetics, McGill University Genome Centre, McGill University, Montréal, QC, Canada.ORCID 0000-0003-4429-0110
McGill University Health Centre · CAMcGill Genome Centre · CA

Funding

Canada Institute of Health Researc
6 · The paper itself

Abstract

Despite the availability of highly efficacious vaccines, coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) lacks effective drug treatment, which results in a high rate of mortality. To address this therapeutic shortcoming, we applied a systems biology approach to the study of patients hospitalized with severe COVID. We show that, at the time of hospital admission, patients who were equivalent on the clinical ordinal scale displayed significant differential monocyte epigenetic and transcriptomic attributes between those who would survive and those who would succumb to COVID-19. We identified messenger RNA metabolism, RNA splicing, and interferon signaling pathways as key host responses overactivated by patients who would not survive. Those pathways are prime drug targets to reduce mortality of critically ill patients with COVID-19, leading us to identify tacrolimus, zotatifin, and nintedanib as three strong candidates for treatment of severely ill patients at the time of hospital admission.

Indexed as

COVID-19 Drug TreatmentAntiviral AgentsHumansSARS-CoV-2Systems BiologyAntiviral Agents

Identifiers

PMID35648852
PMCPMC9159580
OpenAlexW4281615959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.