Evidence map›Paper›PMID 35647396›Full record

ArticleAdvances in radiation oncology

Development and Optimization of a Machine-Learning Prediction Model for Acute Desquamation After Breast Radiation Therapy in the Multicenter REQUITE Cohort.

Mahmoud Aldraimli, Sarah Osman, Diana Grishchuck, Samuel Ingram, Robert Lyon, Anil Mistry, Jorge Oliveira, Robert Samuel, Leila E A Shelley, Daniele Soria and 33 more

Open access · goldAbstract read
In one paragraph

Article in Advances in radiation oncology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 8 countries.

Mahmoud AldraimliHealth Innovation Ecosystem, University of Westminster, London, United Kingdom.
Sarah OsmanPatrick G. Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, United Kingdom.
Diana GrishchuckImperial College Healthcare NHS Trust, London, United Kingdom.
Samuel IngramDivision of Cancer Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom.
Robert LyonDepartment of Computer Science, Edge Hill University, Ormskirk, Lancashire, United Kingdom.
Anil MistryGuy's and St. Thomas' NHS Foundation Trust, London, United Kingdom.
Jorge OliveiraMirada Medical, Oxford, United Kingdom.
Robert SamuelUniversity of Leeds, Leeds Cancer Centre, St. James's University Hospital, Leeds, United Kingdom.
Leila E A ShelleyEdinburgh Cancer Centre, Western General Hospital, Edinburgh, United Kingdom.
Daniele SoriaSchool of Computing, University of Kent, Canterbury, United Kingdom.
Miriam V DwekSchool of Life Sciences, University of Westminster, London, United Kingdom.
Miguel E Aguado-BarreraFundación Publica Galega Medicina Xenomica, Santiago de Compostela, Spain.
David AzriaUniversity of Montpellier, Montpellier, France.
Jenny Chang-ClaudeDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Alison DunningCentre for Cancer Genetic Epidemiology, University of Cambridge, Strangeways Research Laboratory, Worts Causeway, Cambridge, United Kingdom.
Alexandra GiraldoRadiation Oncology Department, Vall d'Hebron Hospital Universitari, Vall d'Hebron Hospital Campus, Barcelona, Spain.
Sheryl GreenDepartment of Radiation Oncology, Icahn School of Medicine at Mount Sinai, New York, New York.
Sara Gutiérrez-EnríquezHereditary Cancer Genetics Group, Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Hospital Campus, Barcelona, Spain.
Carsten HerskindDepartment of Radiation Oncology, Universitätsmedizin Mannheim, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Hans van HulleDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Maarten LambrechtDepartment of Radiation Oncology, University Hospital, Leuven, Belgium.
Laura LozzaDepartment of Radiation Oncology 1, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Tiziana RancatiProstate Cancer Program, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Victoria ReyesRadiation Oncology Department, Vall d'Hebron Hospital Universitari, Vall d'Hebron Hospital Campus, Barcelona, Spain.
Barry S RosensteinIcahn School of Medicine at Mount Sinai, New York, New York.
Dirk de RuysscherMaastricht University Medical Center, Department of Radiation Oncology (Maastro), GROW, Maastricht, The Netherlands.
Maria C de SantisDepartment of Radiation Oncology 1, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Petra SeiboldDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Elena SperkDepartment of Radiation Oncology, Universitätsmedizin Mannheim, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
R Paul SymondsCancer Research Centre, University of Leicester, Leicester, United Kingdom.
Hilary StobartIndependent Cancer Patients' Voice, London, United Kingdom.
Begoña Taboada-ValadaresFundación Publica Galega Medicina Xenomica, Santiago de Compostela, Spain.
Christopher J TalbotDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Vincent J L VakaetDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Ana VegaFundación Publica Galega Medicina Xenomica, Santiago de Compostela, Spain.
Liv VeldemanDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Marlon R VeldwijkDepartment of Radiation Oncology, Universitätsmedizin Mannheim, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Adam WebbDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Caroline WeltensDepartment of Radiation Oncology, University Hospital, Leuven, Belgium.
Catharine M WestUniversity of Manchester, Christie Hospital, Manchester, United Kingdom.
Thierry J ChaussaletHealth Innovation Ecosystem, University of Westminster, London, United Kingdom.
Tim RattayCancer Research Centre, University of Leicester, Leicester, United Kingdom.
REQUITE consortium
University of Leicester · GBFondazione IRCCS Istituto Nazionale dei Tumori · ITGhent University · BEHeidelberg University · DEUniversity of Westminster · GBVall d'Hebron Hospital Universitari · ESIcahn School of Medicine at Mount Sinai · USKU Leuven · BEUniversity of Manchester · GBCentre for Biomedical Network Research on Rare Diseases · ESComplejo Hospitalario Universitario de Santiago · ESEdge Hill University · GBFundación Pública Galega de Medicina Xenómica · ESGerman Cancer Research Center · DEGuy's and St Thomas' NHS Foundation Trust · GBImperial College Healthcare NHS Trust · GBMaastricht University · NLMirada Medical (United Kingdom) · GBQueen's University Belfast · GBThe Patients Association · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Some patients with breast cancer treated by surgery and radiation therapy experience clinically significant toxicity, which may adversely affect cosmesis and quality of life. There is a paucity of validated clinical prediction models for radiation toxicity. We used machine learning (ML) algorithms to develop and optimise a clinical prediction model for acute breast desquamation after whole breast external beam radiation therapy in the prospective multicenter REQUITE cohort study. Methods and Materials: Using demographic and treatment-related features (m = 122) from patients (n = 2058) at 26 centers, we trained 8 ML algorithms with 10-fold cross-validation in a 50:50 random-split data set with class stratification to predict acute breast desquamation. Based on performance in the validation data set, the logistic model tree, random forest, and naïve Bayes models were taken forward to cost-sensitive learning optimisation. Results: One hundred and ninety-two patients experienced acute desquamation. Resampling and cost-sensitive learning optimisation facilitated an improvement in classification performance. Based on maximising sensitivity (true positives), the "hero" model was the cost-sensitive random forest algorithm with a false-negative: false-positive misclassification penalty of 90:1 containing m = 114 predictive features. Model sensitivity and specificity were 0.77 and 0.66, respectively, with an area under the curve of 0.77 in the validation cohort. Conclusions: ML algorithms with resampling and cost-sensitive learning generated clinically valid prediction models for acute desquamation using patient demographic and treatment features. Further external validation and inclusion of genomic markers in ML prediction models are worthwhile, to identify patients at increased risk of toxicity who may benefit from supportive intervention or even a change in treatment plan.

Identifiers

PMID35647396
PMCPMC9133391
OpenAlexW4206584734

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.