Evidence map›Paper›PMID 35643424›Full record

ArticleBMC genomics2022

Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades.

Yuki Yoshida, Tadashi Satoh, Chise Ota, Sae Tanaka, Daiki D Horikawa, Masaru Tomita, Koichi Kato, Kazuharu Arakawa

Abstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  13. Transcriptome analysis of the tardigrade Hypsibius exemplaris exposed to the DNA-damaging agent bleomycin.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yuki YoshidaInstitute for Advanced Biosciences, Keio University, Nihonkoku, 403-1, Daihouji, Tsuruoka, Yamagata, 997-0017, Japan.
Tadashi SatohFaculty and Graduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho, Nagoya, 467-8603, Japan.
Chise OtaFaculty and Graduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho, Nagoya, 467-8603, Japan.
Sae TanakaExploratory Research Center On Life and Living Systems (ExCELLS), National Institute of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan.
Daiki D HorikawaInstitute for Advanced Biosciences, Keio University, Nihonkoku, 403-1, Daihouji, Tsuruoka, Yamagata, 997-0017, Japan.
Masaru TomitaInstitute for Advanced Biosciences, Keio University, Nihonkoku, 403-1, Daihouji, Tsuruoka, Yamagata, 997-0017, Japan.
Koichi KatoFaculty and Graduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho, Nagoya, 467-8603, Japan.
Kazuharu ArakawaInstitute for Advanced Biosciences, Keio University, Nihonkoku, 403-1, Daihouji, Tsuruoka, Yamagata, 997-0017, Japan. gaou@sfc.keio.ac.jp.ORCID http://orcid.org/0000-0002-2893-4919

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTardigrades are microscopic animals that are capable of tolerating extreme environments by entering a desiccated state of suspended animation known as anhydrobiosis. While antioxidative stress proteins, antiapoptotic pathways and tardigrade-specific intrinsically disordered proteins have been implicated in the anhydrobiotic machinery, conservation of these mechanisms is not universal within the phylum Tardigrada, suggesting the existence of overlooked components.

resultsHere, we show that a novel Mn-dependent peroxidase is an important factor in tardigrade anhydrobiosis. Through time-series transcriptome analysis of Ramazzottius varieornatus specimens exposed to ultraviolet light and comparison with anhydrobiosis entry, we first identified several novel gene families without similarity to existing sequences that are induced rapidly after stress exposure. Among these, a single gene family with multiple orthologs that is highly conserved within the phylum Tardigrada and enhances oxidative stress tolerance when expressed in human cells was identified. Crystallographic study of this protein suggested Zn or Mn binding at the active site, and we further confirmed that this protein has Mn-dependent peroxidase activity in vitro.

conclusionsOur results demonstrated novel mechanisms for coping with oxidative stress that may be a fundamental mechanism of anhydrobiosis in tardigrades. Furthermore, localization of these sets of proteins mainly in the Golgi apparatus suggests an indispensable role of the Golgi stress response in desiccation tolerance.

Indexed as

TardigradaAnimalsPeroxidasesTime FactorsTranscriptomeUltraviolet RaysPeroxidasesAnhydrobiosisAntioxidative stressTardigradeUltraviolet C

Identifiers

PMID35643424
PMCPMC9145152

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.