Evidence map›Paper›PMID 35641525›Full record

ArticleNature communications2022

Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize.

Xiaowen Shi, Hua Yang, Chen Chen, Jie Hou, Tieming Ji, Jianlin Cheng, James A Birchler

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. BnaCIPK9 homoeologs mediate the dosage-dependent regulation of seed oil in allotetraploid Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Global modulation of gene expression and transcriptome size in aneuploid combinations of maize.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Maize B chromosome affects the flowering time.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Xiaowen Shi *College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.ORCID 0000-0001-6532-4522
Hua Yang *Division of Biological Sciences, University of Missouri, Columbia, MO, USA.ORCID 0000-0002-9796-5663
Chen ChenDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.
Jie HouDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.
Tieming JiDepartment of Statistics, University of Missouri, Columbia, MO, USA.
Jianlin ChengDepartment of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.ORCID 0000-0003-0305-2853
James A BirchlerDivision of Biological Sciences, University of Missouri, Columbia, MO, USA. BirchlerJ@missouri.edu.ORCID 0000-0003-3643-2756
University of Missouri · USZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomic imbalance caused by varying the dosage of individual chromosomes or chromosomal segments (aneuploidy) has more detrimental effects than altering the dosage of complete chromosome sets (ploidy). Previous analysis of maize (Zea mays) aneuploids revealed global modulation of gene expression both on the varied chromosome (cis) and the remainder of the genome (trans). However, little is known regarding the role of microRNAs (miRNAs) under genomic imbalance. Here, we report the impact of aneuploidy and polyploidy on the expression of miRNAs. In general, cis miRNAs in aneuploids present a predominant gene-dosage effect, whereas trans miRNAs trend toward the inverse level, although other types of responses including dosage compensation, increased effect, and decreased effect also occur. By contrast, polyploids show less differential miRNA expression than aneuploids. Significant correlations between expression levels of miRNAs and their targets are identified in aneuploids, indicating the regulatory role of miRNAs on gene expression triggered by genomic imbalance.

Indexed as

MicroRNAsZea maysAneuploidyGene ExpressionGenomicsPolyploidyMicroRNAs

Identifiers

PMID35641525
PMCPMC9156689
OpenAlexW4281931029

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.