Evidence map›Paper›PMID 35640874›Full record

ArticleGigaScience2022

Modern venomics-Current insights, novel methods, and future perspectives in biological and applied animal venom research.

Bjoern M von Reumont, Gregor Anderluh, Agostinho Antunes, Naira Ayvazyan, Dimitris Beis, Figen Caliskan, Ana Crnković, Maik Damm, Sebastien Dutertre, Lars Ellgaard and 25 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
29.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Transcriptomic Dissection ofInternational journal of molecular sciences · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Quantitative analysis of growth and diversification in venom data using database metrics.Database : the journal of biological databases and curation · 2026
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Structural similarities reveal an expansive conotoxin family with a two-finger toxin fold.Protein science : a publication of the Protein Society · 2025
    Article
  19. Article
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 20 institutions in 18 countries.

Bjoern M von ReumontGoethe University Frankfurt, Institute for Cell Biology and Neuroscience, Department for Applied Bioinformatics, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-7462-8226
Gregor AnderluhDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 1000 Ljubljana, Slovenia.ORCID 0000-0002-9916-8465
Agostinho AntunesCIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos, s/n, 4450-208 Porto, Portugal.ORCID 0000-0002-1328-1732
Naira AyvazyanOrbeli Institute of Physiology of NAS RA, Orbeli ave. 22, 0028 Yerevan, Armenia.ORCID 0000-0002-7588-2277
Dimitris BeisDevelopmental Biology, Centre for Clinical, Experimental Surgery and Translational Research, Biomedical Research Foundation Academy of Athens, Athens 11527, Greece.
Figen CaliskanDepartment of Biology, Faculty of Science and Letters, Eskisehir Osmangazi University, TR-26040 Eskisehir, Turkey.
Ana CrnkovićDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 1000 Ljubljana, Slovenia.ORCID 0000-0002-0581-1887
Maik DammTechnische Universität Berlin, Department of Chemistry, Straße des 17. Juni 135, 10623 Berlin, Germany.
Sebastien DutertreIBMM, Univ Montpellier, CNRS, ENSCM, 34095 Montpellier, France.ORCID 0000-0002-2945-1484
Lars EllgaardDepartment of Biology, University of Copenhagen, DK-2200 Copenhagen, Denmark.ORCID 0000-0002-7018-0137
Goran GajskiInstitute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska cesta 2, 10000 Zagreb, Croatia.ORCID 0000-0002-1886-1453
Hannah GermanAmsterdam Institute of Molecular and Life Sciences, Division of BioAnalytical Chemistry, Faculty of Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081HV Amsterdam, The Netherlands.ORCID 0000-0001-7522-5544
Beata HalassyUniversity of Zagreb, Centre for Research and Knowledge Transfer in Biotechnology, Trg Republike Hrvatske 14, 10000 Zagreb, Croatia.
Benjamin-Florian HempelBIH Center for Regenerative Therapies BCRT, Charité - Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany.ORCID 0000-0002-1998-4033
Tim HuchoTranslational Pain Research, Department of Anesthesiology and Intensive Care Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany.ORCID 0000-0002-4147-9308
Nasit IgciNevsehir Haci Bektas Veli University, Faculty of Arts and Sciences, Department of Molecular Biology and Genetics, 50300 Nevsehir, Turkey.ORCID 0000-0001-6151-808X
Maria P IkonomopoulouMadrid Institute for Advanced Studies in Food, Madrid,E28049, Spain.ORCID 0000-0001-7739-080X
Izhar KarbatDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.ORCID 0000-0003-1855-301X
Maria I KlapaMetabolic Engineering and Systems Biology Laboratory, Institute of Chemical Engineering Sciences, Foundation for Research & Technology Hellas (FORTH/ICE-HT), Patras GR-26504, Greece.ORCID 0000-0002-2047-3185
Ivan KoludarovJustus Liebig University Giessen, Institute for Insectbiotechnology, Heinrich Buff Ring 26-32, 35396 Giessen, Germany.ORCID 0000-0002-9073-4758
Jeroen KoolAmsterdam Institute of Molecular and Life Sciences, Division of BioAnalytical Chemistry, Faculty of Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081HV Amsterdam, The Netherlands.ORCID 0000-0002-0011-5612
Tim LüddeckeLOEWE Centre for Translational Biodiversity Genomics, Senckenberg Frankfurt, Senckenberganlage 25, 60235 Frankfurt, Germany.ORCID 0000-0002-7234-8685
Riadh Ben MansourDepartment of Life Sciences, Faculty of Sciences, Gafsa University, Campus Universitaire Siidi Ahmed Zarrouk, 2112 Gafsa, Tunisia.
Maria Vittoria ModicaDept. of Biology and Evolution of Marine Organisms (BEOM), Stazione Zoologica Anton Dohrn, Via Po 25c, I-00198 Roma, Italy.ORCID 0000-0003-2532-6763
Yehu MoranDepartment of Ecology, Evolution and Behavior, Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.ORCID 0000-0001-9928-9294
Ayse NalbantsoyDepartment of Bioengineering, Faculty of Engineering, Ege University, 35100 Bornova, Izmir, Turkey.ORCID 0000-0002-3852-1974
María Eugenia Pachón IbáñezUnit of Infectious Diseases, Microbiology, and Preventive Medicine, Virgen del Rocío University Hospital, Institute of Biomedicine of Seville, 41013 Sevilla, Spain.
Alexios PanagiotopoulosMetabolic Engineering and Systems Biology Laboratory, Institute of Chemical Engineering Sciences, Foundation for Research & Technology Hellas (FORTH/ICE-HT), Patras GR-26504, Greece.
Eitan ReuvenyDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.ORCID 0000-0003-4945-9683
Javier Sánchez CéspedesUnit of Infectious Diseases, Microbiology, and Preventive Medicine, Virgen del Rocío University Hospital, Institute of Biomedicine of Seville, 41013 Sevilla, Spain.
Andy SombkeDepartment of Evolutionary Biology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria.ORCID 0000-0001-7383-440X
Joachim M SurmDepartment of Ecology, Evolution and Behavior, Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Eivind A B UndheimUniversity of Oslo, Centre for Ecological and Evolutionary Synthesis, Postboks 1066 Blindern 0316 Oslo, Norway.ORCID 0000-0002-8667-3999
Aida VerdesDepartment of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, José Gutiérrez Abascal 2, 28006 Madrid, Spain.ORCID 0000-0002-9193-9253
Giulia ZancolliDepartment of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.
Goethe University Frankfurt · DEHebrew University of Jerusalem · ILInstituto de Salud Carlos III · ESNational Institute of Chemistry · SIVrije Universiteit Amsterdam · NLWeizmann Institute of Science · ILAcademy of Athens · GRCharité - Universitätsmedizin Berlin · DEÉcole Nationale Supérieure de Chimie de Montpellier · FREge University · TREskişehir Osmangazi University · TRFoundation for Research and Technology Hellas · GRInstitute for Medical Research and Occupational Health · HRJustus-Liebig-Universität Gießen · DEL. A. Orbeli Institute of Physiology NAS RA · AMLOEWE Centre for Translational Biodiversity Genomics · DEMadrid Institute for Advanced Studies · ESNevşehir Hacı Bektaş Veli University · TRStazione Zoologica Anton Dohrn · ITTechnische Universität Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Venoms have evolved >100 times in all major animal groups, and their components, known as toxins, have been fine-tuned over millions of years into highly effective biochemical weapons. There are many outstanding questions on the evolution of toxin arsenals, such as how venom genes originate, how venom contributes to the fitness of venomous species, and which modifications at the genomic, transcriptomic, and protein level drive their evolution. These questions have received particularly little attention outside of snakes, cone snails, spiders, and scorpions. Venom compounds have further become a source of inspiration for translational research using their diverse bioactivities for various applications. We highlight here recent advances and new strategies in modern venomics and discuss how recent technological innovations and multi-omic methods dramatically improve research on venomous animals. The study of genomes and their modifications through CRISPR and knockdown technologies will increase our understanding of how toxins evolve and which functions they have in the different ontogenetic stages during the development of venomous animals. Mass spectrometry imaging combined with spatial transcriptomics, in situ hybridization techniques, and modern computer tomography gives us further insights into the spatial distribution of toxins in the venom system and the function of the venom apparatus. All these evolutionary and biological insights contribute to more efficiently identify venom compounds, which can then be synthesized or produced in adapted expression systems to test their bioactivity. Finally, we critically discuss recent agrochemical, pharmaceutical, therapeutic, and diagnostic (so-called translational) aspects of venoms from which humans benefit.

Indexed as

ProteomicsVenomsAnimalsResearchSnakesTranscriptomeVenomsantivenombioassaysenvenomationevolutiongenomicsmodern venomicsspatial -omicstoxin productiontranslational researchvenom

Identifiers

PMID35640874
PMCPMC9155608
OpenAlexW4282944006

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.