Evidence map›Paper›PMID 35640608›Full record

ArticleNucleic acids research2022

Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.

Ya Zhang, Weizhong Chen, Di Wu, Yushi Liu, Zhaowei Wu, Jian Li, Shu-Yu Zhang, Quanjiang Ji

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. A small RNA fromVirulence · 2025
    Article
  4. Bacterial peptidoglycan as a living polymer.Current opinion in chemical biology · 2025
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ya ZhangSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Weizhong ChenSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Di WuShanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering & Frontiers Science Center for Transformative Molecules, Shanghai Jiao Tong University, Shanghai 200240, China.
Yushi LiuSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Zhaowei WuSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Jian LiSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0003-2359-238X
Shu-Yu ZhangShanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering & Frontiers Science Center for Transformative Molecules, Shanghai Jiao Tong University, Shanghai 200240, China.ORCID 0000-0002-1811-4159
Quanjiang JiSchool of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0002-2321-8462
ShanghaiTech University · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cell-wall recycling process is important for bacterial survival in nutrient-limited conditions and, in certain cases, is directly involved in antibiotic resistance. In the sophisticated cell-wall recycling process in Escherichia coli, the transcriptional repressor MurR controls the expression of murP and murQ, which are involved in transporting and metabolizing N-acetylmuramic acid (MurNAc), generating N-acetylmuramic acid-6-phosphate (MurNAc-6-P) and N-acetylglucosamine-6-phosphate (GlcNAc-6-P). Here, we report that both MurNAc-6-P and GlcNAc-6-P can bind to MurR and weaken the DNA binding ability of MurR. Structural characterizations of MurR in complex with MurNAc-6-P or GlcNAc-6-P as well as in the apo form revealed the detailed ligand recognition chemistries. Further studies showed that only MurNAc-6-P, but not GlcNAc-6-P, is capable of derepressing the expression of murQP controlled by MurR in cells and clarified the substrate specificity through the identification of key residues responsible for ligand binding in the complex structures. In summary, this study deciphered the molecular mechanism of the cell wall recycling process regulated by MurR in E. coli.

Indexed as

Escherichia coliCell WallEscherichia coli ProteinsGlycoside HydrolasesLigandsPhosphatesRepressor ProteinsTranscription FactorsEscherichia coli ProteinsGlycoside HydrolasesLigandsMurQ protein, E coliMurR protein, E coliPhosphatesRepressor ProteinsTranscription Factors

Identifiers

PMID35640608
PMCPMC9177960
OpenAlexW4282920725

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.