Evidence map›Paper›PMID 35639811›Full record

ArticlePLoS pathogens2022

Evolution, geographic spreading, and demographic distribution of Enterovirus D68.

Emma B Hodcroft, Robert Dyrdak, Cristina Andrés, Adrian Egli, Josiane Reist, Diego García Martínez de Artola, Julia Alcoba-Flórez, Hubert G M Niesters, Andrés Antón, Randy Poelman and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 62 citations in OpenAlex.

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  4. An RNA-to-RNA pipeline for rapid antiviral antibody development.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 5 countries.

Emma B HodcroftBiozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0002-0078-2212
Robert DyrdakDepartment of Clinical Microbiology, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0001-8456-4898
Cristina AndrésRespiratory Viruses Unit, Virology Section, Microbiology Department, Vall d'Hebron Hospital Universitari, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.ORCID 0000-0002-3200-0895
Adrian EgliClinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
Josiane ReistClinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
Diego García Martínez de ArtolaDepartment of Clinical Microbiology, Hospital Universitario Nuestra Señora de Candelaria, Tenerife, Spain.ORCID 0000-0003-0771-5968
Julia Alcoba-FlórezDepartment of Clinical Microbiology, Hospital Universitario Nuestra Señora de Candelaria, Tenerife, Spain.ORCID 0000-0002-7778-3248
Hubert G M NiestersUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology, Division of Clinical Virology, Groningen, The Netherlands.ORCID 0000-0002-1758-0430
Andrés AntónRespiratory Viruses Unit, Virology Section, Microbiology Department, Vall d'Hebron Hospital Universitari, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.ORCID 0000-0002-1476-0815
Randy PoelmanUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology, Division of Clinical Virology, Groningen, The Netherlands.
Marijke ReyndersUnit of Molecular Microbiology, Medical Microbiology, Department of Laboratory Medicine, AZ Sint-Jan Brugge AV, Bruges, Belgium.ORCID 0000-0003-2079-1279
Elke WollantsKU Leuven, Rega Institute, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical & Epidemiological Virology, Leuven, Belgium.ORCID 0000-0002-4057-2236
Richard A NeherBiozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0003-2525-1407
Jan AlbertDepartment of Clinical Microbiology, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0001-9020-0521
Hospital Universitario Nuestra Señora de Candelaria · ESKarolinska University Hospital · SEUniversity Medical Center Groningen · NLUniversity of Basel · CHVall d'Hebron Institut de Recerca · ESAZ Sint-Jan · BERega Institute for Medical Research · BESIB Swiss Institute of Bioinformatics · CHUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Worldwide outbreaks of enterovirus D68 (EV-D68) in 2014 and 2016 have caused serious respiratory and neurological disease. We collected samples from several European countries during the 2018 outbreak and determined 53 near full-length genome ('whole genome') sequences. These sequences were combined with 718 whole genome and 1,987 VP1-gene publicly available sequences. In 2018, circulating strains clustered into multiple subgroups in the B3 and A2 subclades, with different phylogenetic origins. Clusters in subclade B3 emerged from strains circulating primarily in the US and Europe in 2016, though some had deeper roots linking to Asian strains, while clusters in A2 traced back to strains detected in East Asia in 2015-2016. In 2018, all sequences from the USA formed a distinct subgroup, containing only three non-US samples. Alongside the varied origins of seasonal strains, we found that diversification of these variants begins up to 18 months prior to the first diagnostic detection during a EV-D68 season. EV-D68 displays strong signs of continuous antigenic evolution and all 2018 A2 strains had novel patterns in the putative neutralizing epitopes in the BC- and DE-loops. The pattern in the BC-loop of the USA B3 subgroup had not been detected on that continent before. Patients with EV-D68 in subclade A2 were significantly older than patients with a B3 subclade virus. In contrast to other subclades, the age distribution of A2 is distinctly bimodal and was found primarily among children and in the elderly. We hypothesize that EV-D68's rapid evolution of surface proteins, extensive diversity, and high rate of geographic mixing could be explained by substantial reinfection of adults. Better understanding of evolution and immunity across diverse viral pathogens, including EV-D68 and SARS-CoV-2, is critical to pandemic preparedness in the future.

Indexed as

COVID-19Enterovirus D, HumanEnterovirus InfectionsRespiratory Tract InfectionsAdultAgedChildDemographyDisease OutbreaksHumansPhylogenySARS-CoV-2

Identifiers

PMID35639811
PMCPMC9212145
OpenAlexW4282945451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.