Evidence map›Paper›PMID 35639775›Full record

ArticlePLoS computational biology2022

BOSO: A novel feature selection algorithm for linear regression with high-dimensional data.

Luis V Valcárcel, Edurne San José-Enériz, Xabier Cendoya, Ángel Rubio, Xabier Agirre, Felipe Prósper, Francisco J Planes

Abstract read
In one paragraph

Article in PLoS computational biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Luis V ValcárcelUniversidad de Navarra, Tecnun Escuela de Ingeniería, San Sebastián, Spain.ORCID 0000-0003-3769-5419
Edurne San José-EnérizUniversidad de Navarra, CIMA Centro de Investigación de Medicina Aplicada, Pamplona, Spain.
Xabier CendoyaUniversidad de Navarra, Tecnun Escuela de Ingeniería, San Sebastián, Spain.ORCID 0000-0001-8401-4087
Ángel RubioUniversidad de Navarra, Tecnun Escuela de Ingeniería, San Sebastián, Spain.ORCID 0000-0002-3274-2450
Xabier AgirreUniversidad de Navarra, CIMA Centro de Investigación de Medicina Aplicada, Pamplona, Spain.
Felipe PrósperUniversidad de Navarra, CIMA Centro de Investigación de Medicina Aplicada, Pamplona, Spain.
Francisco J PlanesUniversidad de Navarra, Tecnun Escuela de Ingeniería, San Sebastián, Spain.ORCID 0000-0003-1155-3105

Funding

Cancer Research UK C355/A26819
6 · The paper itself

Abstract

With the frenetic growth of high-dimensional datasets in different biomedical domains, there is an urgent need to develop predictive methods able to deal with this complexity. Feature selection is a relevant strategy in machine learning to address this challenge. We introduce a novel feature selection algorithm for linear regression called BOSO (Bilevel Optimization Selector Operator). We conducted a benchmark of BOSO with key algorithms in the literature, finding a superior accuracy for feature selection in high-dimensional datasets. Proof-of-concept of BOSO for predicting drug sensitivity in cancer is presented. A detailed analysis is carried out for methotrexate, a well-studied drug targeting cancer metabolism.

Indexed as

AlgorithmsNeoplasmsHumansLinear ModelsMachine Learning

Identifiers

PMID35639775
PMCPMC9187084

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.