Evidence map›Paper›PMID 35639691›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants.

Elise Albert, Sungsoo Kim, Maria Magallanes-Lundback, Yan Bao, Nicholas Deason, Benoit Danilo, Di Wu, Xiaowei Li, Joshua C Wood, Nolan Bornowski and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
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  7. Article
  8. Heterologous Expression of SunflowerPlants (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Article
  11. Food science & nutrition · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Vitamin E synthesis and response in plants.Frontiers in plant science · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Elise AlbertDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0001-5060-4505
Sungsoo KimDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0001-7260-336X
Maria Magallanes-LundbackDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0001-5826-6897
Yan BaoDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.
Nicholas DeasonDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-2218-2699
Benoit DaniloDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-0360-282X
Di WuPlant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-5775-8029
Xiaowei LiPlant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-4850-1301
Joshua C WoodDepartment of Plant Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-7691-6088
Nolan BornowskiDepartment of Plant Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0003-0317-6944
Michael A GorePlant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853.ORCID 0000-0001-6896-8024
C Robin BuellDepartment of Plant Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0002-6727-4677
Dean DellaPennaDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824.ORCID 0000-0001-9505-7883

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tocopherol biosynthetic pathway, encoded by VTE genes 1 through 6, is highly conserved in plants but most large effect quantitative trait loci for seed total tocopherols (totalT) lack VTE genes, indicating other activities are involved. A genome-wide association study of Arabidopsis seed tocopherols showed five of seven significant intervals lacked VTE genes, including the most significant, which mapped to an uncharacterized, seed-specific, envelope-localized, alpha/beta hydrolase with esterase activity, designated AtVTE7. Atvte7 null mutants decreased seed totalT 55% while a leaky allele of the maize ortholog, ZmVTE7, decreased kernel and leaf totalT 38% and 49%, respectively. Overexpressing AtVTE7 or ZmVTE7 partially or fully complemented the Atvte7 seed phenotype and increased leaf totalT by 3.6- and 6.9-fold, respectively. VTE7 has the characteristics of an esterase postulated to provide phytol from chlorophyll degradation for tocopherol synthesis, but bulk chlorophyll levels were unaffected in vte7 mutants and overexpressing lines. Instead, levels of specific chlorophyll biosynthetic intermediates containing partially reduced side chains were impacted and strongly correlated with totalT. These intermediates are generated by a membrane-associated biosynthetic complex containing protochlorophyllide reductase, chlorophyll synthase, geranylgeranyl reductase (GGR) and light harvesting-like 3 protein, all of which are required for both chlorophyll and tocopherol biosynthesis. We propose a model where VTE7 releases prenyl alcohols from chlorophyll biosynthetic intermediates, which are then converted to the corresponding diphosphates for tocopherol biosynthesis.

Indexed as

ArabidopsisHydrolasesChloroplastsGenome-Wide Association StudyPhytolPlant BreedingPlantsTocopherolsVitamin EHydrolasesPhytolTocopherolsVitamin EchlorophyllGWAShydrolaseseedvitamin E

Identifiers

PMID35639691
PMCPMC9191347

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.