Evidence map›Paper›PMID 35639673›Full record

ArticleG3 (Bethesda, Md.)2022

Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California.

Arun Sethuraman, Rosalina Stancheva, Ciara Sanders, Lakme Caceres, David Castro, Hannah Hausknecht-Buss, Simone Henry, Haven Johansen, Antolette Kasler, Sandy Lastor and 8 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 1 country.

Arun SethuramanDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-8201-8292
Rosalina StanchevaDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-0562-4026
Ciara SandersDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-3751-5908
Lakme CaceresDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-2019-0505
David CastroDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.
Hannah Hausknecht-BussDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-4235-5358
Simone HenryDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-0650-7163
Haven JohansenDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-1705-7938
Antolette KaslerDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-0312-4677
Sandy LastorDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-4798-3812
Isabelle MassaroDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-2246-0027
Immanuel MekuriaDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-6970-9865
Andrea Moron-SolanoDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-2058-6905
Niki ReadDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.
Gretchen VengerovaDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0001-7428-0357
Andrew ZhangDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0001-5594-4664
Xiaoyu ZhangDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0002-5982-8983
Betsy ReadDepartment of Biology, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0001-7258-8032
San Diego State University · USScripps College · USBay Path University · USCalifornia State University, San Marcos · USCity College of San Francisco · USUniversity of San Diego · US

Funding

The Architecture of Missing and Archaic Variation in Human Population Genomic DataR15GM143700 · NIGMS · CALIFORNIA STATE UNIVERSITY SAN MARCOS · PI AYERS, KIMBERLY · 2021 to 2021
$441k
NIGMS NIH HHS R15 GM143700
6 · The paper itself

Abstract

Here, we report the discovery of a novel Sediminibacterium sequenced from laboratory cultures of freshwater stream cyanobacteria from sites in Southern California, grown in BG11 medium. Our genome-wide analyses reveal a highly contiguous and complete genome (97% BUSCO) that is placed within sediminibacterial clades in phylogenomic analyses. Functional annotation indicates the presence of genes that could be involved in mutualistic/commensal relationship with associated cyanobacterial hosts.

Indexed as

CyanobacteriaRiversFresh WaterGenome-Wide Association StudyPhylogenyannotationgenome assemblyphylogenomicssediminibacteria

Identifiers

PMID35639673
PMCPMC9258536
OpenAlexW4281679323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.