Evidence map›Paper›PMID 35639097›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2022

Frequency of truncating FLCN variants and Birt-Hogg-Dubé-associated phenotypes in a health care system population.

Juliann M Savatt, Hermela Shimelis, Andres Moreno-De-Luca, Natasha T Strande, Matthew T Oetjens, David H Ledbetter, Christa Lese Martin, Scott M Myers, Brenda M Finucane

Open access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

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  12. Journal of the Endocrine Society · 2025
    Article
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  16. Hereditary Renal Cancer Syndromes.Medical sciences (Basel, Switzerland) · 2024
    Review
  17. A Novel FLCN Variant in a Suspected Birt-Hogg-Dubè Syndrome Patient.International journal of molecular sciences · 2023
    Article
  18. Article
  19. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Juliann M SavattAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA; Genomic Medicine Institute, Geisinger, Danville, PA. Electronic address: jmsavatt@geisinger.edu.
Hermela ShimelisAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA.
Andres Moreno-De-LucaAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA; Genomic Medicine Institute, Geisinger, Danville, PA; Department of Radiology, Geisinger, Danville, PA.
Natasha T StrandeAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA; Genomic Medicine Institute, Geisinger, Danville, PA.
Matthew T OetjensAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA.
David H LedbetterAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA; Genomic Medicine Institute, Geisinger, Danville, PA.
Christa Lese MartinAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA; Genomic Medicine Institute, Geisinger, Danville, PA.
Scott M MyersAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA.
Brenda M FinucaneAutism & Developmental Medicine Institute, Geisinger, Lewisburg, PA.
Autism & Developmental Medicine Institute · USGeisinger Medical Center · US

Funding

GENE DOSAGE IMBALANCE IN NEURODEVELOPMENTAL DISORDERSR01MH074090 · NIMH · GEISINGER CLINIC · PI David H. Ledbetter, CHRISTA LESE MARTIN · 2005 to 2026
$13.5M
NIMH NIH HHS R01 MH074090
6 · The paper itself

Abstract

purposePenetrance estimates of Birt-Hogg-Dubé syndrome (BHD)-associated cutaneous, pulmonary, and kidney manifestations are based on clinically ascertained families. In a health care system population, we used a genetics-first approach to estimate the prevalence of pathogenic/likely pathogenic (P/LP) truncating variants in FLCN, which cause BHD, and the penetrance of BHD-related phenotypes.

methodsExomes from 135,990 patient-participants in Geisinger's MyCode cohort were assessed for P/LP truncating FLCN variants. BHD-related phenotypes were evaluated from electronic health records. Association between P/LP FLCN variants and BHD-related phenotypes was assessed using Firth's logistic regression.

resultsP/LP truncating FLCN variants were identified in 35 individuals (1 in 3234 unrelated individuals), 68.6% of whom had BHD-related phenotype(s), including cystic lung disease (65.7%), pneumothoraces (17.1%), cutaneous manifestations (8.6%), and kidney cancer (2.9%). A total of 4 (11.4%) individuals had prior clinical BHD diagnoses.

conclusionIn this health care population, the frequency of P/LP truncating FLCN variants is 60 times higher than the previously reported prevalence. Although most variant-positive individuals had BHD-related phenotypes, a minority were previously clinically diagnosed, likely because cutaneous manifestations, pneumothoraces, and kidney cancer were observed at lower frequencies than in clinical cohorts. Improved clinical recognition of cystic lung disease and education concerning its association with FLCN variants could prompt evaluation for BHD.

Indexed as

Birt-Hogg-Dube SyndromeCystsKidney NeoplasmsLung DiseasesPneumothoraxSkin DiseasesDelivery of Health CareHumansPhenotypeProto-Oncogene ProteinsTumor Suppressor ProteinsFLCN protein, humanProto-Oncogene ProteinsTumor Suppressor ProteinsBasilar cystic lung diseaseBirt-Hogg-Dubé syndromeFLCNHealth care system populationVariant prevalence

Identifiers

PMID35639097
PMCPMC9703446
OpenAlexW4281757380

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.