Evidence map›Paper›PMID 35638817›Full record

ArticleMicrobiology spectrum2022

Genomic Surveillance of Clinical Pseudomonas aeruginosa Isolates Reveals an Additive Effect of Carbapenemase Production on Carbapenem Resistance.

Luke Diorio-Toth, Sidra Irum, Robert F Potter, Meghan A Wallace, Muhammad Arslan, Tehmina Munir, Saadia Andleeb, Carey-Ann D Burnham, Gautam Dantas

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  10. Comparative Genomics ofAntibiotics (Basel, Switzerland) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Luke Diorio-Toth *The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.ORCID 0000-0002-6586-2811
Sidra Irum *Atta ur Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.
Robert F PotterThe Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.
Meghan A WallaceDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Muhammad ArslanPakistan Institute of Medical Sciences (PIMS), Islamabad, Pakistan.
Tehmina MunirDepartment of Microbiology, Army Medical College, National University of Medical Sciences, Rawalpindi, Pakistan.
Saadia AndleebAtta ur Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.
Carey-Ann D BurnhamDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.ORCID 0000-0002-1137-840X
Gautam DantasThe Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA.ORCID 0000-0003-0455-8370
Washington University in St. Louis · USNational University of Sciences and Technology · PKNational University of Medical Sciences · PKPakistan Institute of Medical Sciences · PK

Funding

Impact of early-life perturbations on pediatric microbiome maturationR01AI155893 · NIAID · WASHINGTON UNIVERSITY · PI Gautam Dantas · 2021 to 2026
$4.6M
STRUCTURAL, MECHANISTIC, & EVOLUTIONARY CHARACTERIZATION OF TETRACYCLINE DESTRUCTASESU01AI123394 · NIAID · WASHINGTON UNIVERSITY · PI DANTAS, GAUTAM, WENCEWICZ, TIMOTHY ADAM · 2020 to 2025
$4.1M
Mapping the evolutionary landscape of a novel family of tetracycline resistance enzymesF30AI157161 · NIAID · WASHINGTON UNIVERSITY · PI DIORIO-TOTH, LUKE EVAN · 2021 to 2023
$117k
NIAID NIH HHS F30 AI157161NIAID NIH HHS R01 AI155893NIAID NIH HHS U01 AI123394
6 · The paper itself

Abstract

Carbapenem resistance in Pseudomonas aeruginosa is increasing globally, and surveillance to define the mechanisms of such resistance in low- and middle-income countries is limited. This study establishes the genotypic mechanisms of β-lactam resistance by whole-genome sequencing (WGS) in 142 P. aeruginosa clinical isolates recovered from three hospitals in Islamabad and Rawalpindi, Pakistan between 2016 and 2017. Isolates were subjected to antimicrobial susceptibility testing (AST) by Kirby-Bauer disk diffusion, and their genomes were assembled from Illumina sequencing data. β-lactam resistance was high, with 46% of isolates resistant to piperacillin-tazobactam, 42% to cefepime, 48% to ceftolozane-tazobactam, and 65% to at least one carbapenem. Twenty-two percent of isolates were resistant to all β-lactams tested. WGS revealed that carbapenem resistance was associated with the acquisition of metallo-β-lactamases (MBLs) or extended-spectrum β-lactamases (ESBLs) in the

Indexed as

Pseudomonas aeruginosaPseudomonas InfectionsAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesCarbapenemsGenomicsHumansImipenemMicrobial Sensitivity TestsPhylogenyPorinsTazobactamAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasescarbapenemaseCarbapenemsImipenemPorinsTazobactamcarbapenem resistancehospital-acquired infectionsmolecular epidemiologymultidrug resistancemultidrug-resistant (MDR) Pseudomonas aeruginosaPseudomonas aeruginosa

Identifiers

PMID35638817
PMCPMC9241860
OpenAlexW4281739738

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.