ArticleCell reports methods2022
PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations.
Article in Cell reports methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
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- Psychedelic drug action at dendrites is gated by behavioral state and serotonin receptors.bioRxiv : the preprint server for biology · 2026Article
- Stars2Cells: Astrometric Tracking of Neurons Across Imaging Sessions.bioRxiv : the preprint server for biology · 2026Article
- Adaptive reorganization of history encoding in the retrosplenial cortex supports flexible decision-making strategies.Neuron · 2026Article
- A multicellular analysis calcium imaging toolbox for ImageJ.Cell reports methods · 2026Article
- Noise Sources and Strategies for Signal Quality Improvement in Biological Imaging: A Review Focused on Calcium and Cell Membrane Voltage Imaging.Biosensors · 2026Review
- A Semi-Automatic Tool for the Standardized Analysis of Fluorescent Intensity Changes in Polarized Cells.International journal of molecular sciences · 2025Article
- 24-hour simultaneous mPFC's miniature 2-photon imaging, EEG-EMG, and video recording during natural behaviors.Scientific data · 2025Article
- Unraveling the neural code: analysis of large-scale two-photon microscopy data.Microscopy (Oxford, England) · 2025Review
- A comprehensive suite for extracting neuron signals across multiple sessions in one-photon calcium imaging.Nature communications · 2025Article
- Recurrent activity propagates through labile ensembles in macaque dorsolateral prefrontal microcircuits.Current biology : CB · 2025Article
- Long-term optical imaging of the spinal cord in awake behaving mice.Nature methods · 2024Article
- A simple MATLAB toolbox for analyzing calcium imaging data in vitro and in vivo.Journal of neuroscience methods · 2024Article
- Simultaneous removal of noise and correction of motion warping in neuron calcium imaging using a pipeline structure of self-supervised deep learning models.Biomedical optics express · 2024Article
- Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks.Journal of neuroscience methods · 2024Article
- Exponential history integration with diverse temporal scales in retrosplenial cortex supports hyperbolic behavior.Science advances · 2023Article
- Meta-reinforcement learning via orbitofrontal cortex.Nature neuroscience · 2023Article
- Trigeminal afferents sense locomotion-related meningeal deformations.Cell reports · 2022Article
- Review of data processing of functional optical microscopy for neuroscience.Neurophotonics · 2022Review
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2 authors.
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Abstract
Complex distortions on calcium imaging often impair image registration accuracy. Here, we developed a registration algorithm, PatchWarp, to robustly correct slow image distortion for calcium imaging data. PatchWarp is a two-step algorithm with rigid and non-rigid image registrations. To correct non-uniform image distortions, it splits the imaging field and estimates the best affine transformation matrix for each of the subfields. The distortion-corrected subfields are stitched together like a patchwork to reconstruct the distortion-corrected imaging field. We show that PatchWarp robustly corrects image distortions of calcium imaging data collected from various cortical areas through glass window or gradient-index (GRIN) lens with a higher accuracy than existing non-rigid algorithms. Furthermore, it provides a fully automated method of registering images from different imaging sessions for longitudinal neural activity analyses. PatchWarp improves the quality of neural activity analyses and is useful as a general approach to correct image distortions in a wide range of disciplines.
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