Evidence map›Paper›PMID 35637459›Full record

ArticleGenome biology2022

NT-seq: a chemical-based sequencing method for genomic methylome profiling.

Xuwen Li, Shiyuan Guo, Yan Cui, Zijian Zhang, Xinlong Luo, Margarita T Angelova, Laura F Landweber, Yinsheng Wang, Tao P Wu

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Single-Nucleotide Resolution Mapping ofACS central science · 2023
    Article
  8. Shaping eukaryotic epigenetic systems by horizontal gene transfer.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  9. Review
  10. Transcriptome-wide profiling ofChemical science · 2022
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Xuwen LiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Shiyuan GuoGenetics, Genomics, and Bioinformatics Graduate Program, University of California Riverside, Riverside, CA, USA.
Yan CuiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Zijian ZhangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Xinlong LuoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Margarita T AngelovaDepartments of Biochemistry and Molecular Biophysics and Biological Sciences, Columbia University, New York, NY, USA.
Laura F LandweberDepartments of Biochemistry and Molecular Biophysics and Biological Sciences, Columbia University, New York, NY, USA.
Yinsheng WangGenetics, Genomics, and Bioinformatics Graduate Program, University of California Riverside, Riverside, CA, USA.
Tao P WuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. tao.wu@bcm.edu.ORCID 0000-0002-9859-4534
Baylor College of Medicine · USColumbia University · USUniversity of California, Riverside · US

Funding

Chemical Biology of DNA and RNA AlkylationR35ES031707 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Yinsheng Wang · 2020 to 2026
$6.1M
NIEHS NIH HHS R35 ES031707NIEHS NIH HHS R35ES031707
6 · The paper itself

Abstract

DNA methylation plays vital roles in both prokaryotes and eukaryotes. There are three forms of DNA methylation in prokaryotes: N

Indexed as

5-MethylcytosineEpigenomeDNA MethylationGenome, BacterialGenomics5-MethylcytosineDNA methylationNext-generation sequencingWhole-genome epigenetic profiling

Identifiers

PMID35637459
PMCPMC9150344
OpenAlexW4281877287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.