Evidence map›Paper›PMID 35637316›Full record

ArticleMolecular biology reports2022

Development of an efficient single-cell cloning and expansion strategy for genome edited induced pluripotent stem cells.

Nupur Bhargava, Priya Thakur, Thulasi Priyadharshini Muruganandam, Shashank Jaitly, Pragya Gupta, Neelam Lohani, Sangam Giri Goswami, Vinodh Saravanakumar, Saurabh Kumar Bhattacharya, Suman Jain and 1 more

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Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  4. Efficient correction ofMolecular therapy. Nucleic acids · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Nupur Bhargava *CSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Priya Thakur *CSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Thulasi Priyadharshini MuruganandamCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Shashank JaitlyCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Pragya GuptaCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Neelam LohaniCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Sangam Giri GoswamiCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Vinodh SaravanakumarCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India.
Saurabh Kumar BhattacharyaDr. Lal Path Labs Ltd, New Delhi, India.
Suman JainThalassemia and Sickle Cell Society, Rajendra Nagar, Hyderabad, India.
Sivaprakash RamalingamCSIR Institute of Genomics and Integrative Biology, Mathura Road, Sukhdev Vihar, New Delhi, India. sivaramalingam@igib.res.in.
Institute of Genomics and Integrative Biology · INAcademy of Scientific and Innovative Research · IN

Funding

Department of Biotechnology BT/GET/119/SP31652/2020Science and Engineering Research Board ECR/2017/002212
6 · The paper itself

Abstract

backgroundDisease-specific human induced pluripotent stem cells (hiPSCs) can be generated directly from individuals with known disease characteristics or alternatively be modified using genome editing approaches to introduce disease causing genetic mutations to study the biological response of those mutations. The genome editing procedure in hiPSCs is still inefficient, particularly when it comes to homology directed repair (HDR) of genetic mutations or targeted transgene insertion in the genome and single cell cloning of edited cells. In addition, genome editing processes also involve additional cellular stresses such as poor cell viability and genetic stability of hiPSCs. Therefore, efficient workflows are desired to increase genome editing application to hiPSC disease models and therapeutic applications. METHODS AND

resultsTo this end, we demonstrate an efficient workflow for feeder-free single cell clone generation and expansion in both CRISPR-mediated knock-out (KO) and knock-in (KI) hiPSC lines. Using StemFlex medium and CloneR supplement in conjunction with Matrigel cell culture matrix, we show that cell viability and expansion during single-cell cloning in edited and unedited cells is significantly enhanced. Keeping all factors into account, we have successfully achieved hiPSC single-cell survival and cloning in both edited and unedited cells with rates as maximum as 70% in less than 2 weeks.

conclusionThis simplified and efficient workflow will allow for a new level of sophistication in generating hiPSC-based disease models to promote rapid advancement in basic research and also the development of novel cellular therapeutics.

Indexed as

Induced Pluripotent Stem CellsCloning, MolecularCRISPR-Cas SystemsGene EditingGenome, HumanHumansDisease modelingDrug discoveryGenome-editingInduced pluripotent stem cellsRegenerative medicineSingle-cell cloning

Identifiers

PMID35637316
OpenAlexW4281628656

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.