Evidence map›Paper›PMID 35637276›Full record

ArticleCommunications biology2022

Functional correlates of clinical phenotype and severity in recurrent SCN2A variants.

Géza Berecki, Katherine B Howell, Jacqueline Heighway, Nelson Olivier, Jill Rodda, Isabella Overmars, Danique R M Vlaskamp, Tyson L Ware, Simone Ardern-Holmes, Gaetan Lesca and 6 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. DecipheringArXiv · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 12 institutions in 6 countries.

Géza Berecki *Ion Channels and Human Diseases Group, The Florey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, VIC, 3052, Australia. geza.berecki@florey.edu.au.ORCID 0000-0002-8664-6325
Katherine B Howell *Ion Channels and Human Diseases Group, The Florey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, VIC, 3052, Australia.
Jacqueline HeighwayIon Channels and Human Diseases Group, The Florey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, VIC, 3052, Australia.
Nelson OlivierPraxis Precision Medicines, Inc, Cambridge, MA, 02142, USA.
Jill RoddaMurdoch Children's Research Institute, Parkville, VIC, 3052, Australia.
Isabella OvermarsMurdoch Children's Research Institute, Parkville, VIC, 3052, Australia.ORCID 0000-0002-9710-6113
Danique R M VlaskampDepartments of Neurology and Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Tyson L WareDepartment of Paediatrics, Royal Hobart Hospital, Hobart, TAS, 7000, Australia.
Simone Ardern-HolmesDepartment of Neurology, Children's Hospital Westmead, Sydney, NSW, Australia.
Gaetan LescaService de Génétique, Hospices Civils de Lyon, 69002, Lyon, France.
Michael AlberDepartment of Pediatric Neurology and Developmental Medicine, University Children's Hospital, Tübingen, Germany.
Pierangelo VeggiottiPediatric Neurology Unit, V. Buzzi Children's Hospital, Milan, Italy.
Ingrid E SchefferDepartment of Neurology, Royal Children's Hospital, Parkville, VIC, 3052, Australia.
Samuel F BerkovicEpilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Heidelberg, VIC, 3084, Australia.ORCID 0000-0003-4580-841X
Markus WolffPediatric Neurology, Vivantes Hospital Neukölln, Berlin, Germany.
Steven PetrouIon Channels and Human Diseases Group, The Florey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, VIC, 3052, Australia. steven.petrou@florey.edu.au.
The University of Melbourne · AUMurdoch Children's Research Institute · AURoyal Children's Hospital · AUChildren's Hospital at Westmead · AUFlorey Institute of Neuroscience and Mental Health · AUHospices Civils de Lyon · FROspedale dei Bambini Vittore Buzzi · ITPraxis (United States) · USRoyal Hobart Hospital · AUUniversity Children's Hospital Tübingen · DEUniversity Medical Center Groningen · NLVivantes Klinikum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In SCN2A-related disorders, there is an urgent demand to establish efficient methods for determining the gain- (GoF) or loss-of-function (LoF) character of variants, to identify suitable candidates for precision therapies. Here we classify clinical phenotypes of 179 individuals with 38 recurrent SCN2A variants as early-infantile or later-onset epilepsy, or intellectual disability/autism spectrum disorder (ID/ASD) and assess the functional impact of 13 variants using dynamic action potential clamp (DAPC) and voltage clamp. Results show that 36/38 variants are associated with only one phenotypic group (30 early-infantile, 5 later-onset, 1 ID/ASD). Unexpectedly, we revealed major differences in outcome severity between individuals with the same variant for 40% of early-infantile variants studied. DAPC was superior to voltage clamp in predicting the impact of mutations on neuronal excitability and confirmed GoF produces early-infantile phenotypes and LoF later-onset phenotypes. For one early-infantile variant, the co-expression of the α

Indexed as

Autism Spectrum DisorderEpilepsyIntellectual DisabilityHumansNAV1.2 Voltage-Gated Sodium ChannelPhenotypeNAV1.2 Voltage-Gated Sodium ChannelSCN2A protein, human

Identifiers

PMID35637276
PMCPMC9151917
OpenAlexW4281740505

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.