Evidence map›Paper›PMID 35637217›Full record

ArticleBlood cancer journal2022

Structural variants shape the genomic landscape and clinical outcome of multiple myeloma.

Cody Ashby, Eileen M Boyle, Michael A Bauer, Aneta Mikulasova, Christopher P Wardell, Louis Williams, Ariel Siegel, Patrick Blaney, Marc Braunstein, David Kaminetsky and 6 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Micronuclei: origins, assays, mechanisms, diseases and treatments.Signal transduction and targeted therapy · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Chromoanagenesis in Multiple Myeloma: A Comprehensive Overview.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  9. Thioredoxin Domain Containing 5 (TXNDC5): Friend or Foe?Current issues in molecular biology · 2024
    Review
  10. Article
  11. Molecular genetic aberrations in the pathogenesis of multiple myeloma.Asian biomedicine : research, reviews and news · 2023
    Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Cody Ashby *Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.ORCID 0000-0002-9361-0283
Eileen M Boyle *Perlmutter Cancer Center, NYU Langone Health, New York, NY, USA. Eileen.Boyle@nyulangone.org.ORCID 0000-0001-8791-1744
Michael A Bauer *Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.ORCID 0000-0003-2498-7295
Aneta MikulasovaInstitute of Cellular Medicine, University of Newcastle upon Tyne, Newcastle, UK.
Christopher P WardellDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.ORCID 0000-0002-9416-7818
Louis WilliamsPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
Ariel SiegelPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
Patrick BlaneyPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.ORCID 0000-0002-9319-8866
Marc BraunsteinPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
David KaminetskyPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
Jonathan KeatsIntegrated Cancer Genomics Division, Translational Genomics Research Institute, Phoenix, USA.ORCID 0000-0003-4375-7399
Francesco MauraSylvester Cancer Center University of Miami, Miami, FL, USA.ORCID 0000-0002-5017-1620
Ola LandgrenSylvester Cancer Center University of Miami, Miami, FL, USA.ORCID 0000-0001-6485-4839
Brian A WalkerDivision of Hematology Oncology Indiana University, Indianapolis, IN, USA.ORCID 0000-0002-8615-6254
Faith E DaviesPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
Gareth J MorganPerlmutter Cancer Center, NYU Langone Health, New York, NY, USA. Gareth.morgan@nyulangone.org.
NYU Langone Health · USWinthrop Rockefeller Foundation · USUniversity of Miami · USIndiana University – Purdue University Indianapolis · USNewcastle University · GBTranslational Genomics Research Institute · US

Funding

Unfolded Protein Response and Autophagy in T Helper Cell Effector FunctionP20GM121176 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI VOJO P DERETIC · 2017 to 2026
$24.9M
NIGMS NIH HHS P20 GM121176
6 · The paper itself

Abstract

Deciphering genomic architecture is key to identifying novel disease drivers and understanding the mechanisms underlying myeloma initiation and progression. In this work, using the CoMMpass dataset, we show that structural variants (SV) occur in a nonrandom fashion throughout the genome with an increased frequency in the t(4;14), RB1, or TP53 mutated cases and reduced frequency in t(11;14) cases. By mapping sites of chromosomal rearrangements to topologically associated domains and identifying significantly upregulated genes by RNAseq we identify both predicted and novel putative driver genes. These data highlight the heterogeneity of transcriptional dysregulation occurring as a consequence of both the canonical and novel structural variants. Further, it shows that the complex rearrangements chromoplexy, chromothripsis and templated insertions are common in MM with each variant having its own distinct frequency and impact on clinical outcome. Chromothripsis is associated with a significant independent negative impact on clinical outcome in newly diagnosed cases consistent with its use alongside other clinical and genetic risk factors to identify prognosis.

Indexed as

ChromothripsisMultiple MyelomaChromosome AberrationsGene RearrangementGenomicsHumans

Identifiers

PMID35637217
PMCPMC9151656
OpenAlexW4281711196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.