Evidence map›Paper›PMID 35637192›Full record

ArticleNature communications2022

A cancer-associated RNA polymerase III identity drives robust transcription and expression of snaR-A noncoding RNA.

Kevin Van Bortle, David P Marciano, Qing Liu, Tristan Chou, Andrew M Lipchik, Sanjay Gollapudi, Benjamin S Geller, Emma Monte, Rohinton T Kamakaka, Michael P Snyder

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

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  14. Crosstalk between vault RNAs and innate immunity.Molecular biology reports · 2024
    Review
  15. AbioRxiv : the preprint server for biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Kevin Van BortleDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-0733-0830
David P MarcianoDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0001-8868-2138
Qing LiuDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Tristan ChouDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Andrew M LipchikDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Sanjay GollapudiGenomics Research Internship Program at Stanford, Stanford University, Stanford, CA, 94305, USA.
Benjamin S GellerDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-3497-6186
Emma MonteDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-2566-1967
Rohinton T KamakakaDepartment of Molecular, Cell, and Developmental Biology, University of Santa Cruz, Santa Cruz, CA, 95064, USA.
Michael P SnyderDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA. mpsnyder@stanford.edu.ORCID 0000-0003-0784-7987
Stanford University · USUniversity of California, Santa Cruz · USEugene Applebaum College of Pharmacy and Health Sciences · USSouthern Illinois University School of Medicine · USStanford Medicine · USUniversity of Illinois Urbana-Champaign · US

Funding

Chromatin Domain DynamicsR01GM078068 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KAMAKAKA, ROHINTON T. · 2007 to 2018
$3.7M
The development and application of tools to characterize the level and function of RNA polymerase III transcription dynamics during cellular differentiationR00HG010362 · NHGRI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI VAN BORTLE, KEVIN · 2022 to 2024
$747k
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
The development and application of tools to characterize the level and function of RNA polymerase III transcription dynamics during cellular differentiationK99HG010362 · NHGRI · STANFORD UNIVERSITY · PI VAN BORTLE, KEVIN · 2019 to 2020
$238k
Therapeutic Rescue of a Deficient BMPR2 Hypoxic Response in Pulmonary Arterial HypertensionK99HL145097 · NHLBI · STANFORD UNIVERSITY · PI MARCIANO, DAVID P · 2019 to 2020
$221k
NHGRI NIH HHS K99 HG010362NHGRI NIH HHS R00 HG010362NHLBI NIH HHS K99 HL145097NIGMS NIH HHS R01 GM078068NIH HHS S10 OD020141
6 · The paper itself

Abstract

RNA polymerase III (Pol III) includes two alternate isoforms, defined by mutually exclusive incorporation of subunit POLR3G (RPC7α) or POLR3GL (RPC7β), in mammals. The contributions of POLR3G and POLR3GL to transcription potential has remained poorly defined. Here, we discover that loss of subunit POLR3G is accompanied by a restricted repertoire of genes transcribed by Pol III. Particularly sensitive is snaR-A, a small noncoding RNA implicated in cancer proliferation and metastasis. Analysis of Pol III isoform biases and downstream chromatin features identifies loss of POLR3G and snaR-A during differentiation, and conversely, re-establishment of POLR3G gene expression and SNAR-A gene features in cancer contexts. Our results support a model in which Pol III identity functions as an important transcriptional regulatory mechanism. Upregulation of POLR3G, which is driven by MYC, identifies a subgroup of patients with unfavorable survival outcomes in specific cancers, further implicating the POLR3G-enhanced transcription repertoire as a potential disease factor.

Indexed as

NeoplasmsRNA, Small UntranslatedAnimalsChromatinHumansMammalsProtein IsoformsRNA Polymerase IIIChromatinPOLR3G protein, humanProtein IsoformsRNA Polymerase IIIRNA, Small Untranslated

Identifiers

PMID35637192
PMCPMC9151912
OpenAlexW4282048623

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.