Evidence map›Paper›PMID 35635327›Full record

ArticleMedical physics2022

A tissue-fraction estimation-based segmentation method for quantitative dopamine transporter SPECT.

Ziping Liu, Hae Sol Moon, Zekun Li, Richard Laforest, Joel S Perlmutter, Scott A Norris, Abhinav K Jha

Abstract read
In one paragraph

Article in Medical physics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Need for objective task-based evaluation of AI-based segmentation methods for quantitative PET.Proceedings of SPIE--the International Society for Optical Engineering · 2023
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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Ziping LiuDepartment of Biomedical Engineering, Washington University, St. Louis, Missouri, USA.
Hae Sol MoonDepartment of Biomedical Engineering, Washington University, St. Louis, Missouri, USA.
Zekun LiDepartment of Biomedical Engineering, Washington University, St. Louis, Missouri, USA.
Richard LaforestMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri, USA.
Joel S PerlmutterMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri, USA.
Scott A NorrisMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri, USA.
Abhinav K JhaDepartment of Biomedical Engineering, Washington University, St. Louis, Missouri, USA.

Funding

The Role of Striatal Cholinergic Interneurons in DystoniaR01NS124789 · NINDS · WASHINGTON UNIVERSITY · PI Scott Allen Norris · 2022 to 2026
$3.0M
A no-gold-standard framework to objectively evaluate quantitative imaging methods with patient dataR01EB031051 · NIBIB · WASHINGTON UNIVERSITY · PI JHA, ABHINAV K · 2021 to 2025
$2.1M
A fully automated PET radiomics frameworkR56EB028287 · NIBIB · WASHINGTON UNIVERSITY · PI JHA, ABHINAV K · 2021 to 2021
$493k
Transmission-less attenuation and scatter compensation in myocardial perfusion SPECT with list-mode dataR21EB024647 · NIBIB · WASHINGTON UNIVERSITY · PI JHA, ABHINAV K · 2018 to 2019
$430k
NIBIB NIH HHS R01 EB031051NIBIB NIH HHS R01-EB031051NIBIB NIH HHS R21 EB024647NIBIB NIH HHS R21-EB024647NIBIB NIH HHS R56 EB028287NIBIB NIH HHS R56-EB028287NINDS NIH HHS R01 NS124789NINDS NIH HHS R01-NS124789
6 · The paper itself

Abstract

backgroundQuantitative measures of dopamine transporter (DaT) uptake in caudate, putamen, and globus pallidus (GP) derived from dopamine transporter-single-photon emission computed tomography (DaT-SPECT) images have potential as biomarkers for measuring the severity of Parkinson's disease. Reliable quantification of this uptake requires accurate segmentation of the considered regions. However, segmentation of these regions from DaT-SPECT images is challenging, a major reason being partial-volume effects (PVEs) in SPECT. The PVEs arise from two sources, namely the limited system resolution and reconstruction of images over finite-sized voxel grids. The limited system resolution results in blurred boundaries of the different regions. The finite voxel size leads to TFEs, that is, voxels contain a mixture of regions. Thus, there is an important need for methods that can account for the PVEs, including the TFEs, and accurately segment the caudate, putamen, and GP, from DaT-SPECT images. PURPOSE: Design and objectively evaluate a fully automated tissue-fraction estimation-based segmentation method that segments the caudate, putamen, and GP from DaT-SPECT images.

methodsThe proposed method estimates the posterior mean of the fractional volumes occupied by the caudate, putamen, and GP within each voxel of a three-dimensional DaT-SPECT image. The estimate is obtained by minimizing a cost function based on the binary cross-entropy loss between the true and estimated fractional volumes over a population of SPECT images, where the distribution of true fractional volumes is obtained from existing populations of clinical magnetic resonance images. The method is implemented using a supervised deep-learning-based approach.

resultsEvaluations using clinically guided highly realistic simulation studies show that the proposed method accurately segmented the caudate, putamen, and GP with high mean Dice similarity coefficients of ∼ 0.80 and significantly outperformed (

conclusionsThe proposed tissue-fraction estimation-based segmentation method for DaT-SPECT images demonstrated the ability to accurately segment the caudate, putamen, and GP, and reliably quantify the uptake within these regions. The results motivate further evaluation of the method with physical-phantom and patient studies.

Indexed as

Dopamine Plasma Membrane Transport ProteinsParkinson DiseaseAlgorithmsHumansMagnetic Resonance ImagingTomography, Emission-Computed, Single-PhotonDopamine Plasma Membrane Transport Proteinsobjective task-based evaluationparkinson's diseasepartial-volume effectsquantificationsegmentationsingle-photon emission computed tomographytissue-fraction effects

Identifiers

PMID35635327
PMCPMC9703616

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.