Evidence map›Paper›PMID 35634956›Full record

ArticleImmunity, inflammation and disease2022

Characterizing the landscape of cervical squamous cell carcinoma immune microenvironment by integrating the single-cell transcriptomics and RNA-Seq.

Ruiling Yin, Xiuming Zhai, Hongyan Han, Xuedong Tong, Yan Li, Kun Deng

Open access · goldAbstract read
In one paragraph

Article in Immunity, inflammation and disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ruiling YinDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.ORCID 0000-0001-6646-9176
Xiuming ZhaiDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Hongyan HanDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Xuedong TongDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Yan LiDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Kun DengDepartment of Laboratory Medicine, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Chongqing Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCervical squamous cell carcinoma (CSCC), caused by the infection of high-risk human papillomavirus, is one of the most common malignancies in women worldwide.

methodsRNA expression data, including those from the Cancer Genome Atlas, Gene Expression Omnibus, and Genotype-Tissue Expression databases, were used to identify the expression of RNAs in normal and tumor tissue. Correlation analysis was performed to identify the immune-related long noncoding RNAs (IRLs) and hypoxia-related genes (IRHs) that can influence the activity of the immune system. Prognosis models of immune-related RNAs (IRRs) were used to construct a coexpression network of the immune system. We identified the role of IRRs in immunotherapy by correlation analysis with immune checkpoint genes (ICGs). We then validated the expression data by integrating two single-cell sequencing data sets of CSCC to identify the key immune features.

resultsIn total, six immune-related gene (IRG), four IRL, and five IRH signatures that can significantly influence the characteristics of the tumor immune microenvironment (TIME) were selected using machine learning methods. The expression level of ICGs was significantly upregulated in GZMB

conclusionsCD16

Indexed as

Carcinoma, Squamous CellTranscriptomeCD8-Positive T-LymphocytesFemaleHumansHypoxiaRNA-SeqTumor Microenvironmentcervical cancerimmunotherapysingle-cell sequencingTAM

Identifiers

PMID35634956
PMCPMC9091987
OpenAlexW4280496626

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.