Evidence map›Paper›PMID 35634778›Full record

ArticleProtein science : a publication of the Protein Society2022

Engineering defensin α-helix to produce high-affinity SARS-CoV-2 spike protein binding ligands.

Leonardo Antônio Fernandes, Anderson Albino Gomes, Beatriz Gomes Guimarães, Maria de Lourdes Borba Magalhães, Partha Ray, Gustavo Felippe da Silva

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Leonardo Antônio FernandesBiochemistry Laboratory, Center of Agroveterinary Sciences, State University of Santa Catarina, Lages, Santa Catarina, Brazil.ORCID 0000-0001-5017-527X
Anderson Albino GomesBiochemistry Laboratory, Center of Agroveterinary Sciences, State University of Santa Catarina, Lages, Santa Catarina, Brazil.ORCID 0000-0003-2321-2893
Beatriz Gomes GuimarãesLaboratory of Structural Biology and Protein Engineering, Instituto Carlos Chagas - ICC/FIOCRUZ, Curitiba-PR, Brazil.
Maria de Lourdes Borba MagalhãesBiochemistry Laboratory, Center of Agroveterinary Sciences, State University of Santa Catarina, Lages, Santa Catarina, Brazil.ORCID 0000-0003-2699-7649
Partha RayDivision of Surgical Oncology, Department of Surgery, Moores Cancer Center, University of California - San Diego Health, La Jolla, California, USA.ORCID 0000-0002-7075-5463
Gustavo Felippe da SilvaBiochemistry Laboratory, Center of Agroveterinary Sciences, State University of Santa Catarina, Lages, Santa Catarina, Brazil.ORCID 0000-0002-3164-5990
Universidade do Estado de Santa Catarina · BRFundação Carlos Chagas · BRUniversity of California San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The binding of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein to the angiotensin-converting enzyme 2 (ACE2) receptor expressed on the host cells is a critical initial step for viral infection. This interaction is blocked through competitive inhibition by soluble ACE2 protein. Therefore, developing high-affinity and cost-effective ACE2 mimetic ligands that disrupt this protein-protein interaction is a promising strategy for viral diagnostics and therapy. We employed human and plant defensins, a class of small (2-5 kDa) and highly stable proteins containing solvent-exposed alpha-helix, conformationally constrained by two disulfide bonds. Therefore, we engineered the amino acid residues on the constrained alpha-helix of defensins to mimic the critical residues on the ACE2 helix 1 that interact with the SARS-CoV-2 spike protein. The engineered proteins (h-deface2, p-deface2, and p-deface2-MUT) were soluble and purified to homogeneity with a high yield from a bacterial expression system. The proteins demonstrated exceptional thermostability (Tm 70.7°C), high-affinity binding to the spike protein with apparent K

Indexed as

COVID-19Spike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2DefensinsHumansLigandsMembrane GlycoproteinsPeptidyl-Dipeptidase AProtein Conformation, alpha-HelicalSARS-CoV-2Viral Envelope ProteinsAngiotensin-Converting Enzyme 2DefensinsLigandsMembrane GlycoproteinsPeptidyl-Dipeptidase ASpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Viral Envelope ProteinsACE2COVID-19defensinSARS-CoV-2 diagnosticsspike-protein

Identifiers

PMID35634778
PMCPMC9144876
OpenAlexW4281931329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.