Evidence map›Paper›PMID 35632765›Full record

ArticleViruses2022

Molecular Epidemiology of Turkey Coronaviruses in Poland.

Katarzyna Domańska-Blicharz, Anna Lisowska, Justyna Opolska, Anna Pikuła, Joanna Sajewicz-Krukowska

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Targeted detection and molecular epidemiology of turkey coronavirus spike gene variants in turkeys and chickens.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Katarzyna Domańska-BlicharzDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Pulawy, Poland.ORCID 0000-0002-0642-3931
Anna LisowskaDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Pulawy, Poland.
Justyna OpolskaDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Pulawy, Poland.
Anna PikułaDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Pulawy, Poland.ORCID 0000-0002-8364-3938
Joanna Sajewicz-KrukowskaDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Pulawy, Poland.ORCID 0000-0002-8471-0231
National Veterinary Research Institute · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The only knowledge of the molecular structure of European turkey coronaviruses (TCoVs) comes from France. These viruses have a quite distinct S gene from North American isolates. The aim of the study was to estimate the prevalence of TCoV strains in a Polish turkey farm during a twelve-year period, between 2008 and 2019, and to characterize their full-length S gene. Out of the 648 flocks tested, 65 (10.0%, 95% CI: 7.9-12.6) were positive for TCoV and 16 of them were molecularly characterized. Phylogenetic analysis showed that these strains belonged to two clusters, one formed by the early isolates identified at the beginning of the TCoV monitoring (from 2009 to 2010), and the other, which was formed by more recent strains from 2014 to 2019. Our analysis of the changes observed in the deduced amino acids of the S1 protein suggests the existence of three variable regions. Moreover, although the selection pressure analysis showed that the TCoV strains were evolving under negative selection, some sites of the S1 subunit were positively selected, and most of them were located within the proposed variable regions. Our sequence analysis also showed one TCoV strain had recombined with another one in the S1 gene. The presented investigation on the molecular feature of the S gene of TCoVs circulating in the turkey population in Poland contributes interesting data to the current state of knowledge.

Indexed as

Coronavirus, TurkeyEnteritis, Transmissible, of TurkeysAnimalsMolecular EpidemiologyPhylogenyPolandTurkeyscoronavirusPolandturkey

Identifiers

PMID35632765
PMCPMC9148103
OpenAlexW4280565776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.