Evidence map›Paper›PMID 35632596›Full record

ArticleViruses2022

Complexity of Human Cytomegalovirus Infection in South African HIV-Exposed Infants with Pneumonia.

Kerusha Govender, Raveen Parboosing, Salvatore Camiolo, Petr Hubáček, Irene Görzer, Elisabeth Puchhammer-Stöckl, Nicolás M Suárez

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Kerusha GovenderDepartment of Virology, University of KwaZulu Natal and National Health Laboratory Service, Durban 4000, South Africa.ORCID 0000-0001-5189-0734
Raveen ParboosingDepartment of Virology, University of KwaZulu Natal and National Health Laboratory Service, Durban 4000, South Africa.
Salvatore CamioloMedical Research Council-University of Glasgow Centre for Virus Research, Bearsden, Glasgow G61 1QH, UK.
Petr HubáčekDepartment of Medical Microbiology, 2nd Faculty of Medicine, Charles University and Motol University Hospital, 150 06 Prague, Czech Republic.
Irene GörzerCenter for Virology, Medical University of Vienna, 1090 Vienna, Austria.ORCID 0000-0003-1936-0404
Elisabeth Puchhammer-StöcklCenter for Virology, Medical University of Vienna, 1090 Vienna, Austria.
Nicolás M SuárezMedical Research Council-University of Glasgow Centre for Virus Research, Bearsden, Glasgow G61 1QH, UK.
Medical University of Vienna · ATMRC University of Glasgow Centre for Virus Research · GBNational Health Laboratory Service · ZACharles University · CZ

Funding

Austrian Science Fund FWF P 31503Medical Research Council MC_UU_12014/3
6 · The paper itself

Abstract

Human cytomegalovirus (HCMV) can cause significant end-organ diseases such as pneumonia in HIV-exposed infants. Complex viral factors may influence pathogenesis including: a large genome with a sizeable coding capacity, numerous gene regions of hypervariability, multiple-strain infections, and tissue compartmentalization of strains. We used a whole genome sequencing approach to assess the complexity of infection by comparing high-throughput sequencing data obtained from respiratory and blood specimens of HIV-exposed infants with severe HCMV pneumonia with those of lung transplant recipients and patients with hematological disorders. There were significantly more specimens from HIV-exposed infants showing multiple HCMV strain infection. Some genotypes, such as UL73 G4B and UL74 G4, were significantly more prevalent in HIV-exposed infants with severe HCMV pneumonia. Some genotypes were predominant in the respiratory specimens of several patients. However, the predominance was not statistically significant, precluding firm conclusions on anatomical compartmentalization in the lung.

Indexed as

Cytomegalovirus InfectionsHIV InfectionsPneumoniaCytomegalovirusHumansInfantSouth AfricacompartmentalizationgenotypeHIVhuman cytomegalovirusmultiple-strain infectionspneumoniawhole genome sequence

Identifiers

PMID35632596
PMCPMC9147013
OpenAlexW4224327218

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.