Evidence map›Paper›PMID 35630545›Full record

ArticleMolecules (Basel, Switzerland)2022

Bioactive Phytoconstituents as Potent Inhibitors of Tyrosine-Protein Kinase Yes (YES1): Implications in Anticancer Therapeutics.

Chunmin Yang, Afsar Alam, Fahad A Alhumaydhi, Mohd Shahnawaz Khan, Suliman A Alsagaby, Waleed Al Abdulmonem, Md Imtaiyaz Hassan, Anas Shamsi, Bilqees Bano, Dharmendra Kumar Yadav

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 5 countries.

Chunmin YangSchool of Engineering, Guangzhou College of Technology and Business, Guangzhou 510850, China.
Afsar AlamDepartment of Computer Science, Jamia Millia Islamia, Jamia Nagar, New Delhi 110025, India.
Fahad A AlhumaydhiDepartment of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Buraydah 52571, Saudi Arabia.ORCID 0000-0002-0151-8309
Mohd Shahnawaz KhanDepartment of Biochemistry, College of Sciences, King Saud University, Riyadh 11451, Saudi Arabia.
Suliman A AlsagabyDepartment of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Majmaah 11932, Saudi Arabia.ORCID 0000-0002-2242-5638
Waleed Al AbdulmonemDepartment of Pathology, College of Medicine, Qassim University, P.O. Box 6655, Buraydah 52571, Saudi Arabia.ORCID 0000-0003-2984-9262
Md Imtaiyaz HassanCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, Jamia Nagar, New Delhi 110025, India.ORCID 0000-0002-3663-4940
Anas ShamsiCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, Jamia Nagar, New Delhi 110025, India.ORCID 0000-0001-7055-7056
Bilqees BanoDepartment of Biochemistry, f/O Life Science, Aligarh Muslim University, Aligarh 202002, India.
Dharmendra Kumar YadavCollege of Pharmacy, Gachon University of Medicine and Science, Hambakmoeiro, Yeonsu-gu, Incheon 21924, Korea.ORCID 0000-0003-1102-1993
Jamia Millia Islamia · INQassim University · SAAjman University · AEAligarh Muslim University · INGachon University · KRGuangzhou Vocational College of Science and Technology · CNKing Saud University · SAMajmaah University · SA

Funding

King Saud University RSP-2021/352
6 · The paper itself

Abstract

Tyrosine-protein kinase Yes (YES1) belongs to the Tyrosine-protein kinase family and is involved in several biological activities, including cell survival, cell-cell adhesion, cell differentiation, and cytoskeleton remodeling. It is highly expressed in esophageal, lung, and bladder cancers, and thus considered as an attractive drug target for cancer therapy. In this study, we performed a virtual screening of phytoconstituents from the IMPPAT database to identify potential inhibitors of YES1. Initially, the molecules were retrieved on their physicochemical properties following the Lipinski rule of five. Then binding affinities calculation, PAINS filter, ADMET, and PASS analyses followed by an interaction analysis to select safe and clinically better hits. Finally, two compounds, Glabrene and Lupinisoflavone C (LIC), with appreciable affinities and a specific interaction towards the AlphaFold predicted structure of YES1, were identified. Their time-evolution analyses were carried out using an all-atom molecular dynamics (MD) simulation, principal component analysis, and free energy landscapes. Altogether, we propose that Glabrene and LIC can be further explored in clinical settings to develop anticancer therapeutics targeting YES1 kinase.

Indexed as

Molecular Dynamics SimulationProtein-Tyrosine KinasesMolecular Docking SimulationTyrosineProtein-Tyrosine KinasesTyrosinecancerdrug discoveryfree energy landscapeGlabreneLupinisoflavone Cmolecular dynamics simulationsphytoconstituentsYES1 kinase

Identifiers

PMID35630545
PMCPMC9147520
OpenAlexW4280521439

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.