Evidence map›Paper›PMID 35630353›Full record

ArticleMicroorganisms2022

Persulfide-Responsive Transcription Factor SqrR Regulates Gene Transfer and Biofilm Formation via the Metabolic Modulation of Cyclic di-GMP in

Takayuki Shimizu, Toma Aritoshi, J Thomas Beatty, Tatsuru Masuda

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Loss of the Rhodobacter capsulatus Serine Acetyl Transferase Gene,Applied and environmental microbiology · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Takayuki ShimizuGraduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan.ORCID 0000-0002-2956-9386
Toma AritoshiGraduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan.
J Thomas BeattyDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.ORCID 0000-0002-1425-0532
Tatsuru MasudaGraduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan.ORCID 0000-0002-1585-5832
Tokyo University of the Arts · JPUniversity of British Columbia · CA

Funding

Institute for Fermentation G-2019-2-010Japan Society for the Promotion of Science JP18H03941Japan Society for the Promotion of Science JP19H03241Japan Society for the Promotion of Science JP20K06681Japan Society for the Promotion of Science JP21H05271Japan Society for the Promotion of Science JP21K15038Kurita Water and Environment Foundation 20B004Kurita Water and Environment Foundation 21K001Natural Sciences and Engineering Research Council RGPIN 2018-03898
6 · The paper itself

Abstract

Bacterial phage-like particles (gene transfer agents-GTAs) are widely employed as a crucial genetic vector in horizontal gene transfer. GTA-mediated gene transfer is induced in response to various stresses; however, regulatory mechanisms are poorly understood. We found that the persulfide-responsive transcription factor SqrR may repress the expression of several GTA-related genes in the photosynthetic bacterium

Indexed as

cyclic GMPgene transferpersulfideredox signalingtranscriptional regulation

Identifiers

PMID35630353
PMCPMC9143464
OpenAlexW4224861424

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.