Evidence map›Paper›PMID 35629179›Full record

ArticleJournal of personalized medicine2022

Assessing the Need for Semantic Data Integration for Surgical Biobanks-A Knowledge Representation Perspective.

Mathias Brochhausen, Justin M Whorton, Cilia E Zayas, Monica P Kimbrell, Sarah J Bost, Nitya Singh, Christoph Brochhausen, Kevin W Sexton, Bernd Blobel

Abstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mathias BrochhausenDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0003-1834-3856
Justin M WhortonDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Cilia E ZayasDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0003-3156-0222
Monica P KimbrellTrauma Performance Improvement Coordinator, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Sarah J BostDepartment of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0001-8553-9539
Nitya SinghDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611, USA.
Christoph BrochhausenCentral Biobank, Institute of Pathology, University and University Clinic of Regensburg, 93053 Regensburg, Germany.
Kevin W SextonDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.ORCID 0000-0002-1460-9867
Bernd BlobelMedical Faculty, University of Regensburg, 93053 Regensburg, Germany.

Funding

Trauma Institutional Priorities and Teams for Outcome Efficacy (TIPTOE)R01GM111324 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI BROCHHAUSEN, MATHIAS, SEXTON, KEVIN WAYNE · 2015 to 2025
$3.1M
NIGMS NIH HHS R01 GM111324NIGMS NIH HHS R01GM111324
6 · The paper itself

Abstract

To improve patient outcomes after trauma, the need to decrypt the post-traumatic immune response has been identified. One prerequisite to drive advancement in understanding that domain is the implementation of surgical biobanks. This paper focuses on the outcomes of patients with one of two diagnoses: post-traumatic arthritis and osteomyelitis. In creating surgical biobanks, currently, many obstacles must be overcome. Roadblocks exist around scoping of data that is to be collected, and the semantic integration of these data. In this paper, the generic component model and the Semantic Web technology stack are used to solve issues related to data integration. The results are twofold: (a) a scoping analysis of data and the ontologies required to harmonize and integrate it, and (b) resolution of common data integration issues in integrating data relevant to trauma surgery.

Indexed as

biomedical ontologiesknowledge representationosteomyelitispost-traumatic arthritissemantic data integrationsurgical biobanksystem theory

Identifiers

PMID35629179
PMCPMC9147545

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.