Evidence map›Paper›PMID 35629129›Full record

ArticleJournal of personalized medicine2022

Deep-ADCA: Development and Validation of Deep Learning Model for Automated Diagnosis Code Assignment Using Clinical Notes in Electronic Medical Records.

Jakir Hossain Bhuiyan Masud, Chiang Shun, Chen-Cheng Kuo, Md Mohaimenul Islam, Chih-Yang Yeh, Hsuan-Chia Yang, Ming-Chin Lin

Abstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jakir Hossain Bhuiyan MasudGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0002-4542-3862
Chiang ShunGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.
Chen-Cheng KuoGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.
Md Mohaimenul IslamInternational Center for Health Information Technology (ICHIT), College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0001-6026-2748
Chih-Yang YehGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.
Hsuan-Chia YangGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0001-9198-0697
Ming-Chin LinGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0001-9624-9705

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Currently, the International Classification of Diseases (ICD) codes are being used to improve clinical, financial, and administrative performance. Inaccurate ICD coding can lower the quality of care, and delay or prevent reimbursement. However, selecting the appropriate ICD code from a patient's clinical history is time-consuming and requires expert knowledge. The rapid spread of electronic medical records (EMRs) has generated a large amount of clinical data and provides an opportunity to predict ICD codes using deep learning models. The main objective of this study was to use a deep learning-based natural language processing (NLP) model to accurately predict ICD-10 codes, which could help providers to make better clinical decisions and improve their level of service. We retrospectively collected clinical notes from five outpatient departments (OPD) from one university teaching hospital between January 2016 and December 2016. We applied NLP techniques, including global vectors, word to vectors, and embedding techniques to process the data. The dataset was split into two independent training and testing datasets consisting of 90% and 10% of the entire dataset, respectively. A convolutional neural network (CNN) model was developed, and the performance was measured using the precision, recall, and F-score. A total of 21,953 medical records were collected from 5016 patients. The performance of the CNN model for the five different departments was clinically satisfactory (Precision: 0.50~0.69 and recall: 0.78~0.91). However, the CNN model achieved the best performance for the cardiology department, with a precision of 69%, a recall of 89% and an F-score of 78%. The CNN model for predicting ICD-10 codes provides an opportunity to improve the quality of care. Implementing this model in real-world clinical settings could reduce the manual coding workload, enhance the efficiency of clinical coding, and support physicians in making better clinical decisions.

Indexed as

clinical noteconvolutional neural networkdiagnosis codesmedication listsnatural language processing

Identifiers

PMID35629129
PMCPMC9146030

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.