Evidence map›Paper›PMID 35627263›Full record

ReviewGenes2022

Potential Misidentification of Natural Isomers and Mass-Analogs of Modified Nucleosides by Liquid Chromatography-Triple Quadrupole Mass Spectrometry.

Xiuying Lin, Qianhui Zhang, Yichao Qin, Qisheng Zhong, Daizhu Lv, Xiaopeng Wu, Pengcheng Fu, Huan Lin

Abstract readReview
In one paragraph

Review in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Analysis of RNA and Its Modifications.Annual review of analytical chemistry (Palo Alto, Calif.) · 2024
    Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xiuying LinState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.
Qianhui ZhangCollege of Food Science and Engineering, Hainan University, Haikou 570228, China.
Yichao QinState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.ORCID 0000-0002-8702-7438
Qisheng ZhongShimadzu (China) Corporation, Guangzhou Branch, Guangzhou 510656, China.
Daizhu LvAnalysis and Testing Center, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
Xiaopeng WuAnalysis and Testing Center, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
Pengcheng FuState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.ORCID 0000-0001-8850-9212
Huan LinState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.ORCID 0000-0003-0134-5361

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triple quadrupole mass spectrometry coupled to liquid chromatography (LC-TQ-MS) can detect and quantify modified nucleosides present in various types of RNA, and is being used increasingly in epitranscriptomics. However, due to the low resolution of TQ-MS and the structural complexity of the many naturally modified nucleosides identified to date (>160), the discrimination of isomers and mass-analogs can be problematic and is often overlooked. This study analyzes 17 nucleoside standards by LC-TQ-MS with separation on three different analytical columns and discusses, with examples, three major causes of analyte misidentification: structural isomers, mass-analogs, and isotopic crosstalk. It is hoped that this overview and practical examples will help to strengthen the accuracy of the identification of modified nucleosides by LC-TQ-MS.

Indexed as

NucleosidesRNAChromatography, LiquidMass SpectrometryNucleosidesRNAepitranscriptomicsHILICLC-MS/MSnucleoside misidentificationRNA modificationtRNA

Identifiers

PMID35627263
PMCPMC9140458

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.