Evidence map›Paper›PMID 35627185›Full record

ArticleGenes2022

Bioinformatics Analysis of the Interaction of miRNAs and piRNAs with Human mRNA Genes Having di- and Trinucleotide Repeats.

Ayaz Belkozhayev, Raigul Niyazova, Cornelia Wilson, Nurlan Jainakbayev, Anna Pyrkova, Yeldar Ashirbekov, Aigul Akimniyazova, Kamalidin Sharipov, Anatoliy Ivashchenko

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. ComparativeFrontiers in plant science · 2026
    Article
  4. Review
  5. Review
  6. In Silico Analysis of miRNA-mRNA Binding Sites inPlants (Basel, Switzerland) · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. In Silico Study of piRNA Interactions with the SARS-CoV-2 Genome.International journal of molecular sciences · 2022
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ayaz BelkozhayevDepartment of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan.ORCID 0000-0001-7429-4994
Raigul NiyazovaDepartment of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan.
Cornelia WilsonSchool of Human and Life Sciences, Canterbury Christ Church University, Sandwich CT13 9FF, UK.ORCID 0000-0001-6584-6179
Nurlan JainakbayevDepartment of Public Health, Kazakh-Russian Medical University, Almaty 050022, Kazakhstan.
Anna PyrkovaCenter for Bioinformatics and Nanomedicine, Almaty 050060, Kazakhstan.ORCID 0000-0001-8483-451X
Yeldar AshirbekovM.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan.ORCID 0000-0002-2265-9717
Aigul AkimniyazovaHigher School of Medicine, Faculty of Medicine and Healthcare, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan.
Kamalidin SharipovM.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan.ORCID 0000-0001-5946-5521
Anatoliy IvashchenkoCenter for Bioinformatics and Nanomedicine, Almaty 050060, Kazakhstan.ORCID 0000-0002-7969-2016
Al-Farabi Kazakh National University · KZCanterbury Christ Church University · GBInstitute of Plant Biology and Biotechnology · KZKazakh National Medical University · KZKazakhstan Medical University · KZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The variability of nucleotide repeats is considered one of the causes of diseases, but their biological function is not understood. In recent years, the interaction of miRNAs and piRNAs with the mRNAs of genes responsible for developing neurodegenerative and oncological diseases and diabetes have been actively studied. We explored candidate genes with nucleotide repeats to predict associations with miRNAs and piRNAs. The parameters of miRNAs and piRNA binding sites with mRNAs of human genes having nucleotide repeats were determined using the MirTarget program. This program defines the start of the initiation of miRNA and piRNA binding to mRNAs, the localization of miRNA and piRNA binding sites in the 5'-untranslated region (5'UTR), coding sequence (CDS) and 3'-untranslated region (3'UTR); the free energy of binding; and the schemes of nucleotide interactions of miRNAs and piRNAs with mRNAs. The characteristics of miRNAs and piRNA binding sites with mRNAs of 73 human genes were determined. The 5'UTR, 3'UTR and CDS of the mRNAs of genes are involved in the development of neurodegenerative, oncological and diabetes diseases with GU, AC dinucleotide and CCG, CAG, GCC, CGG, CGC trinucleotide repeats. The associations of miRNAs, piRNAs and candidate target genes could be recommended for developing methods for diagnosing diseases, including neurodegenerative diseases, oncological diseases and diabetes.

Indexed as

MicroRNAs3' Untranslated Regions5' Untranslated RegionsComputational BiologyHumansNucleotidesRNA, MessengerRNA, Small InterferingTrinucleotide Repeats3' Untranslated Regions5' Untranslated RegionsMicroRNAsNucleotidesRNA, MessengerRNA, Small InterferingdiabetesgenemiRNA bindingmRNAneurodegenerative disordersnucleotide repeatsoncological diseasespiRNA

Identifiers

PMID35627185
PMCPMC9141802
OpenAlexW4225143210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.