Evidence map›Paper›PMID 35627176›Full record

ArticleGenes2022

Computational Saturation Mutagenesis to Investigate the Effects of Neurexin-1 Mutations on AlphaFold Structure.

Raina Rhoades, Brianna Henry, Dominique Prichett, Yayin Fang, Shaolei Teng

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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  3. Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Raina RhoadesDepartment of Biology, Howard University, Washington, DC 20059, USA.ORCID 0000-0001-6241-0513
Brianna HenryDepartment of Biology, Howard University, Washington, DC 20059, USA.
Dominique PrichettDepartment of Biology, Howard University, Washington, DC 20059, USA.ORCID 0000-0003-1187-1162
Yayin FangDepartment of Biochemistry and Molecular Biology, Howard University, Washington, DC 20059, USA.
Shaolei TengDepartment of Biology, Howard University, Washington, DC 20059, USA.
Howard University · US

Funding

Sleep Disorders in Adults with Sickle Cell Disease: Frequency, Associations with Cardiovascular and Pain Indicators, and Responses to TreatmentU54MD007597 · NIMHD · HOWARD UNIVERSITY · PI Tatiana V.D. Sanses · 2019 to 2026
$37.7M
NIMHD NIH HHS U54 MD007597
6 · The paper itself

Abstract

Neurexin-1 (NRXN1) is a membrane protein essential in synapse formation and cell signaling as a cell-adhesion molecule and cell-surface receptor. NRXN1 and its binding partner neuroligin have been associated with deficits in cognition. Recent genetics research has linked NRXN1 missense mutations to increased risk for brain disorders, including schizophrenia (SCZ) and autism spectrum disorder (ASD). Investigation of the structure-function relationship in NRXN1 has proven difficult due to a lack of the experimental full-length membrane protein structure. AlphaFold, a deep learning-based predictor, succeeds in high-quality protein structure prediction and offers a solution for membrane protein model construction. In the study, we applied a computational saturation mutagenesis method to analyze the systemic effects of missense mutations on protein functions in a human NRXN1 structure predicted from AlphaFold and an experimental

Indexed as

Autism Spectrum DisorderAnimalsCalcium-Binding ProteinsCattleHumansMembrane ProteinsMutagenesisMutationNerve Tissue ProteinsNeural Cell Adhesion MoleculesReproducibility of ResultsCalcium-Binding ProteinsMembrane ProteinsNerve Tissue ProteinsNeural Cell Adhesion MoleculesNRXN1 protein, humanAlphaFoldcomputational saturation mutagenesismissense mutationneurexin-1protein stability

Identifiers

PMID35627176
PMCPMC9141173
OpenAlexW4225008383

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.