Evidence map›Paper›PMID 35624647›Full record

ArticleBiosensors2022

Kinetics of Isothermal Dumbbell Exponential Amplification: Effects of Mix Composition on LAMP and Its Derivatives.

Maud Savonnet, Mathilde Aubret, Patricia Laurent, Yoann Roupioz, Myriam Cubizolles, Arnaud Buhot

Open access · goldAbstract read
In one paragraph

Article in Biosensors, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Maud SavonnetUniv. Grenoble Alpes, CEA, CNRS, IRIG-SyMMES, 38000 Grenoble, France.
Mathilde AubretUniv. Grenoble Alpes, CEA, CNRS, IRIG-SyMMES, 38000 Grenoble, France.
Patricia LaurentMicrofluidic Systems and Bioengineering Lab, Technologies for Healthcare and Biology Department, Univ. Grenoble Alpes, CEA, LETI, 38000 Grenoble, France.
Yoann RoupiozUniv. Grenoble Alpes, CEA, CNRS, IRIG-SyMMES, 38000 Grenoble, France.ORCID 0000-0002-1790-8141
Myriam CubizollesMicrofluidic Systems and Bioengineering Lab, Technologies for Healthcare and Biology Department, Univ. Grenoble Alpes, CEA, LETI, 38000 Grenoble, France.ORCID 0000-0001-7521-5178
Arnaud BuhotUniv. Grenoble Alpes, CEA, CNRS, IRIG-SyMMES, 38000 Grenoble, France.ORCID 0000-0001-7643-4305
Centre National de la Recherche Scientifique · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

LABEX ARCANE EUR 398 CBH-EUR-GS (ANR-17-EURE-0003)Région Auvergne Rhône Alpes DEDICATE
6 · The paper itself

Abstract

Loop-mediated isothermal amplification (LAMP) is an exponential amplification method of DNA strands that is more and more used for its high performances. Thanks to its high sensitivity and selectivity, LAMP found numerous applications from the detection of pathogens or viruses through their genome amplification to its incorporation as an amplification strategy in protein or miRNA biomarker quantification. The LAMP method is composed of two stages: the first one consists in the transformation of the DNA strands into dumbbell structures formed of two stems and loops thanks to four primers; then, in the second stage, only two primers are required to amplify the dumbbells exponentially in numerous hairpins of increasing lengths. In this paper, we propose a theoretical framework to analyze the kinetics of the second stage of LAMP, the isothermal dumbbell exponential amplification (IDEA) as function of the physico-chemical parameters of the amplification reaction. Dedicated experiments validate the models. We believe these results may help the optimization of LAMP performances by reducing the number of experiments necessary to find the best parameters.

Indexed as

Molecular Diagnostic TechniquesNucleic Acid Amplification TechniquesDNAKineticsDNAisothermal dumbbell exponential amplification (IDEA)kinetic modellogistic functionloop mediated isothermal amplification (LAMP)nucleic acids amplification

Identifiers

PMID35624647
PMCPMC9138685
OpenAlexW4280609117

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.