Evidence map›Paper›PMID 35624179›Full record

ArticleScientific data2022

Proteomic and transcriptomic profiles of human urothelial cancer cells with histone deacetylase 5 overexpression.

Ananda Ayyappan Jaguva Vasudevan, Michèle J Hoffmann, Gereon Poschmann, Patrick Petzsch, Constanze Wiek, Kai Stühler, Karl Köhrer, Wolfgang A Schulz, Günter Niegisch

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Research progress on lysine acetylation (Review).International journal of molecular medicine · 2026
    Review
  2. Review
  3. Article
  4. Epigenetic Priming and Development of New Combination Therapy Approaches.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ananda Ayyappan Jaguva VasudevanDepartment of Urology, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany. anand.jaguvavasudevan@nih.gov.
Michèle J HoffmannDepartment of Urology, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0002-6044-1671
Gereon PoschmannInstitute for Molecular Medicine, Proteome Research, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0003-2448-0611
Patrick PetzschGenomics & Transcriptomics Laboratory, Biological and Medical Research Centre (BMFZ), Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0002-8355-5524
Constanze WiekDepartment of Otorhinolaryngology, Head and Neck Surgery, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, 40225, Germany.
Kai StühlerInstitute for Molecular Medicine, Proteome Research, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.
Karl KöhrerGenomics & Transcriptomics Laboratory, Biological and Medical Research Centre (BMFZ), Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0003-3644-2022
Wolfgang A SchulzDepartment of Urology, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.
Günter NiegischDepartment of Urology, University Hospital and Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany. guenter.niegisch@med.uni-duesseldorf.de.ORCID 0000-0001-6929-8691
Düsseldorf University Hospital · DEHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urothelial carcinoma (UC) of the urinary bladder is a prevalent cancer worldwide. Because histone deacetylases (HDACs) are important factors in cancer, targeting these epigenetic regulators is considered an attractive strategy to develop novel anticancer drugs. Whereas HDAC1 and HDAC2 promote UC, HDAC5 is often downregulated and only weakly expressed in UC cell lines, suggesting a tumor-suppressive function. We studied the effect of stable lentiviral-mediated HDAC5 overexpression in four UC cell lines with different phenotypes (RT112, VM-Cub-1, SW1710, and UM-UC-3, each with vector controls). In particular, comprehensive proteomics and RNA-seq transcriptomics analyses were performed on the four cell line pairs, which are described here. For comparison, the immortalized benign urothelial cell line HBLAK was included. These datasets will be a useful resource for researchers studying UC, and especially the influence of HDAC5 on epithelial-mesenchymal transition (EMT). Moreover, these data will inform studies on HDAC5 as a less studied member of the HDAC family in other cell types and diseases, especially fibrosis.

Indexed as

Carcinoma, Transitional CellHistone DeacetylasesUrinary Bladder NeoplasmsCell Line, TumorHumansProteomicsTranscriptomeHistone Deacetylases

Identifiers

PMID35624179
PMCPMC9142574
OpenAlexW4281631893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.