Evidence map›Paper›PMID 35624105›Full record

ArticleNature communications2022

Automated vitrification of cryo-EM samples with controllable sample thickness using suction and real-time optical inspection.

Roman I Koning, Hildo Vader, Martijn van Nugteren, Peter A Grocutt, Wen Yang, Ludovic L R Renault, Abraham J Koster, Arnold C F Kamp, Michael Schwertner

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
8.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  9. A complete 3D-printed tool kit for Solid-State NMR sample and rotor handling.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2024
    Article
  10. Review
  11. VitroJet: new features and case studies.Acta crystallographica. Section D, Structural biology · 2024
    Article
  12. Cryo-electron microscopy-based drug design.Frontiers in molecular biosciences · 2024
    Review
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Roman I KoningElectron Microscopy, Cell and Chemical Biology, Leiden University Medical Center, P.O. Box 9600, 2300, RC, Leiden, The Netherlands. r.i.koning@lumc.nl.ORCID 0000-0001-6736-7147
Hildo VaderLinkam Scientific Instruments Ltd, Tadworth, Surrey, KT20 5LR, UK.
Martijn van NugterenLinkam Scientific Instruments Ltd, Tadworth, Surrey, KT20 5LR, UK.ORCID 0000-0002-2441-377X
Peter A GrocuttLinkam Scientific Instruments Ltd, Tadworth, Surrey, KT20 5LR, UK.
Wen YangNeCEN, Institute of Biology Leiden, Leiden University, Gorlaeus Building, Einsteinweg 55, 2333, CC, Leiden, The Netherlands.
Ludovic L R RenaultNeCEN, Institute of Biology Leiden, Leiden University, Gorlaeus Building, Einsteinweg 55, 2333, CC, Leiden, The Netherlands.ORCID 0000-0001-6464-8808
Abraham J KosterElectron Microscopy, Cell and Chemical Biology, Leiden University Medical Center, P.O. Box 9600, 2300, RC, Leiden, The Netherlands.ORCID 0000-0003-1717-2549
Arnold C F KampLinkam Scientific Instruments Ltd, Tadworth, Surrey, KT20 5LR, UK.
Michael SchwertnerLinkam Scientific Instruments Ltd, Tadworth, Surrey, KT20 5LR, UK.ORCID 0000-0001-6904-8270
IS Instruments (United Kingdom) · GBLeiden University · NLLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The speed and efficiency of data collection and image processing in cryo-electron microscopy have increased over the last decade. However, cryo specimen preparation techniques have lagged and faster, more reproducible specimen preparation devices are needed. Here, we present a vitrification device with highly automated sample handling, requiring only limited user interaction. Moreover, the device allows inspection of thin films using light microscopy, since the excess liquid is removed through suction by tubes, not blotting paper. In combination with dew-point control, this enables thin film preparation in a controlled and reproducible manner. The advantage is that the quality of the prepared cryo specimen is characterized before electron microscopy data acquisition. The practicality and performance of the device are illustrated with experimental results obtained by vitrification of protein suspensions, lipid vesicles, bacterial and human cells, followed by imaged using single particle analysis, cryo-electron tomography, and cryo correlated light and electron microscopy.

Indexed as

Electron Microscope TomographyVitrificationCryoelectron MicroscopyHumansProteinsSuctionProteins

Identifiers

PMID35624105
PMCPMC9142589
OpenAlexW4281688343

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.