Evidence map›Paper›PMID 35622884›Full record

ArticlePloS one2022

Complex protein interactions mediate Drosophila Lar function in muscle tissue.

Jessica Kawakami, David Brooks, Rana Zalmai, Steven D Hartson, Samuel Bouyain, Erika R Geisbrecht

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jessica KawakamiDepartment of Cell and Molecular Biology and Biochemistry, University of Missouri-Kansas City, Kansas City, MO, United States of America.ORCID 0000-0002-7141-5698
David BrooksDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas, United States of America.
Rana ZalmaiDepartment of Cell and Molecular Biology and Biochemistry, University of Missouri-Kansas City, Kansas City, MO, United States of America.
Steven D HartsonDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, United States of America.
Samuel BouyainDepartment of Cell and Molecular Biology and Biochemistry, University of Missouri-Kansas City, Kansas City, MO, United States of America.ORCID 0000-0002-7499-738X
Erika R GeisbrechtDepartment of Cell and Molecular Biology and Biochemistry, University of Missouri-Kansas City, Kansas City, MO, United States of America.ORCID 0000-0002-1450-7166
University of Missouri–Kansas City · USKansas State University · USOklahoma State University · US

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Mechanisms Underlying Muscle Development in DrosophilaR01AR060788 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI Erika Rae Geisbrecht · 2012 to 2026
$4.3M
The molecular architecture of perineuronal netsR01GM143757 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI BOUYAIN, SAMUEL, MATTHEWS, RUSSELL T. · 2021 to 2024
$1.6M
Protein Tyrosine Phosphatase Signaling in Muscle MaintenanceR21AR066264 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI BOUYAIN, SAMUEL · 2014 to 2015
$358k
NIAMS NIH HHS R01 AR060788NIAMS NIH HHS R21 AR066264NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R01 GM143757
6 · The paper itself

Abstract

The type IIa family of receptor protein tyrosine phosphatases (RPTPs), including Lar, RPTPσ and RPTPδ, are well-studied in coordinating actin cytoskeletal rearrangements during axon guidance and synaptogenesis. To determine whether this regulation is conserved in other tissues, interdisciplinary approaches were utilized to study Lar-RPTPs in the Drosophila musculature. Here we find that the single fly ortholog, Drosophila Lar (Dlar), is localized to the muscle costamere and that a decrease in Dlar causes aberrant sarcomeric patterning, deficits in larval locomotion, and integrin mislocalization. Sequence analysis uncovered an evolutionarily conserved Lys-Gly-Asp (KGD) signature in the extracellular region of Dlar. Since this tripeptide sequence is similar to the integrin-binding Arg-Gly-Asp (RGD) motif, we tested the hypothesis that Dlar directly interacts with integrin proteins. However, structural analyses of the fibronectin type III domains of Dlar and two vertebrate orthologs that include this conserved motif indicate that this KGD tripeptide is not accessible and thus unlikely to mediate physical interactions with integrins. These results, together with the proteomics identification of basement membrane (BM) proteins as potential ligands for type IIa RPTPs, suggest a complex network of protein interactions in the extracellular space that may mediate Lar function and/or signaling in muscle tissue.

Indexed as

DrosophilaDrosophila ProteinsAnimalsIntegrinsMembrane ProteinsMusclesProtein Tyrosine PhosphatasesReceptor-Like Protein Tyrosine PhosphatasesSignal TransductionDrosophila ProteinsIntegrinsLar protein, DrosophilaMembrane ProteinsProtein Tyrosine PhosphatasesReceptor-Like Protein Tyrosine Phosphatases

Identifiers

PMID35622884
PMCPMC9140312
OpenAlexW4281771442

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.