Evidence map›Paper›PMID 35622325›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Immunoglobulin/T Cell Receptor Capture Strategy for Comprehensive Immunogenetics.

James Peter Stewart, Jana Gazdova, Shambhavi Srivastava, Julia Revolta, Louise Harewood, Manisha Maurya, Nikos Darzentas, David Gonzalez

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

James Peter StewartPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Jana GazdovaPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Shambhavi SrivastavaPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Julia RevoltaPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Louise HarewoodPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Manisha MauryaPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.
Nikos DarzentasDepartment of Hematology, University Hospital Schleswig-Holstein, Kiel, Germany.
David GonzalezPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK. D.GonzalezdeCastro@qub.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the era of genomic medicine, targeted next generation sequencing strategies (NGS) are becoming increasingly adopted by clinical molecular diagnostic laboratories to identify genetic diagnostic and prognostic biomarkers in hemato-oncology. We describe the EuroClonality-NGS DNA Capture (EuroClonality-NDC) assay, which is designed to simultaneously detect B and T cell clonal rearrangements, translocations, copy number alterations, and sequence variants. The accompanying validated bioinformatics pipeline enables production of an integrated report. The combination of the laboratory protocol and bioinformatics pipeline in the EuroClonality-NDC minimizes the potential for human error, reduces economic costs compared to current molecular testing strategies, and should improve diagnostic outcomes.

Indexed as

ImmunogeneticsReceptors, Antigen, T-CellDNA Copy Number VariationsHigh-Throughput Nucleotide SequencingHumansImmunoglobulinsImmunoglobulinsReceptors, Antigen, T-CellBIOMED-2Copy number alterationEuroClonalityImmunoglobulinLymphomaNext generation sequencingT cell receptorTranslocation

Identifiers

PMID35622325
PMCPMC9761918

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.