Evidence map›Paper›PMID 35622319›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia.

Patrick Villarese, Chrystelle Abdo, Matthieu Bertrand, Florian Thonier, Mathieu Giraud, Mikaël Salson, Elizabeth Macintyre

Open access · hybridAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Patrick VillareseHôpital Necker Enfants-Malades, Laboratoire d'Onco-Hématologie, Assistance Publique- Hôpitaux de Paris, Paris, France.
Chrystelle AbdoHôpital Necker Enfants-Malades, Laboratoire d'Onco-Hématologie, Assistance Publique- Hôpitaux de Paris, Paris, France.
Matthieu BertrandHôpital Necker Enfants-Malades, Laboratoire d'Onco-Hématologie, Assistance Publique- Hôpitaux de Paris, Paris, France.
Florian ThonierInria, Rennes, France.
Mathieu GiraudUniversité de Lille, CNRS, UMR 9189 CRIStAL, Lille, France.
Mikaël SalsonUniversité de Lille, CNRS, UMR 9189 CRIStAL, Lille, France.
Elizabeth MacintyreHôpital Necker Enfants-Malades, Laboratoire d'Onco-Hématologie, Assistance Publique- Hôpitaux de Paris, Paris, France. elizabeth.macintyre@aphp.fr.
Hôpital Necker-Enfants Malades · FRAssistance Publique – Hôpitaux de Paris · FRCentre National de la Recherche Scientifique · FRInria Rennes - Bretagne Atlantique Research Centre · FRUniversité de Lille · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within the EuroClonality-NGS group, immune repertoire analysis for target identification in lymphoid malignancies was initially developed using two-stage amplicon approaches, essentially as a progressive modification of preceding methods developed for Sanger sequencing. This approach has, however, limitations with respect to sample handling, adaptation to automation, and risk of contamination by amplicon products. We therefore developed one-step PCR amplicon methods with individual barcoding for batched analysis for IGH, IGK, TRD, TRG, and TRB rearrangements, followed by Vidjil-based data analysis.

Indexed as

Genes, T-Cell ReceptorHigh-Throughput Nucleotide SequencingImmunoglobulinsPrecursor Cell Lymphoblastic Leukemia-LymphomaRecombination, GeneticHumansNeoplasm, ResidualImmunoglobulinsB cell receptorNext-generation sequencingOne stepT cell receptor

Identifiers

PMID35622319
PMCPMC9761905
OpenAlexW4285210648

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.