Evidence map›Paper›PMID 35622225›Full record

ArticleJournal of microbiology (Seoul, Korea)2022

Effects of tryptophan and phenylalanine on tryptophol production in Saccharomyces cerevisiae revealed by transcriptomic and metabolomic analyses.

Xiaowei Gong, Huajun Luo, Liu Hong, Jun Wu, Heng Wu, Chunxia Song, Wei Zhao, Yi Han, Ya Dao, Xia Zhang and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. A comprehensive review and comparison of L-tryptophan biosynthesis inFrontiers in bioengineering and biotechnology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Xiaowei Gong *R&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Huajun Luo *Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, P. R. China.
Liu HongR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Jun WuR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Heng WuR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Chunxia SongFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, P. R. China.
Wei ZhaoR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Yi HanR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Ya DaoFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, P. R. China.
Xia ZhangR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China.
Donglai ZhuR&D Center, China Tobacco Yunnan Industrial Co., Ltd., Kunming, 650231, P. R. China. 16594939@qq.com.
Yiyong LuoFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, P. R. China. yyongl-168@jxnu.edu.cn.
China Tobacco · CNKunming University of Science and Technology · CNJiangxi Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tryptophol (TOL) is a metabolic derivative of tryptophan (Trp) and shows pleiotropic effects in humans, plants and microbes. In this study, the effect of Trp and phenylalanine (Phe) on TOL production in Saccharomyces cerevisiae was determined, and a systematic interpretation of TOL accumulation was offered by transcriptomic and metabolomic analyses. Trp significantly promoted TOL production, but the output plateaued (231.02-266.31 mg/L) at Trp concentrations ≥ 0.6 g/L. In contrast, Phe reduced the stimulatory effect of Trp, which was strongly dependent on the Phe concentration. An integrated genomic, transcriptomic, and metabolomic analysis revealed that the effect of Trp and Phe on TOL production was mainly related to the transamination and decarboxylation of the Ehrlich pathway. Additionally, other genes, including thiamine regulon genes (this), the allantoin catabolic genes dal1, dal2, dal4, and the transcriptional activator gene aro80, may play important roles. These findings were partly supported by the fact that the thi4 gene was involved in TOL production, as shown by heterologous expression analysis. To the best of our knowledge, this novel biological function of thi4 in S. cerevisiae is reported here for the first time. Overall, our findings provide insights into the mechanism of TOL production, which will contribute to TOL production using metabolic engineering strategies.

Indexed as

AlcoholsIndolesPhenylalanineSaccharomyces cerevisiaeTryptophanSaccharomyces cerevisiae ProteinsTranscriptomeAlcoholsIndolesPhenylalanineSaccharomyces cerevisiae ProteinsTHI4 protein, S cerevisiaeTryptophantryptopholmultiomic analysisnitrogen catabolite repressionSaccharomyces cerevisiaethiamine regulon gene thi4transamination and decarboxylationtryptophol production

Identifiers

PMID35622225
OpenAlexW4281740737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.