Evidence map›Paper›PMID 35620008›Full record

ArticleRoyal Society open science2022

Agent-based modelling of iron cycling bacteria provides a framework for testing alternative environmental conditions and modes of action.

Andre Then, Jan Ewald, Natalie Söllner, Rebecca E Cooper, Kirsten Küsel, Bashar Ibrahim, Stefan Schuster

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Royal Society open science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Andre ThenDepartment of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
Jan EwaldDepartment of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
Natalie SöllnerDepartment of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
Rebecca E CooperInstitute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany.ORCID 0000-0001-8867-666X
Kirsten KüselInstitute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany.
Bashar IbrahimCentre for Applied Mathematics and Bioinformatics, and Department of Mathematics and Natural Sciences, Gulf University for Science and Technology, Hawally 32093, Kuwait.ORCID 0000-0001-7773-0122
Stefan SchusterDepartment of Bioinformatics, Matthias-Schleiden-Institute, University of Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.ORCID 0000-0003-2828-9355
Friedrich Schiller University Jena · DEGerman Centre for Integrative Biodiversity Research · DEGulf University for Science & Technology · KW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron-reducing and iron-oxidizing bacteria are of interest in a variety of environmental and industrial applications. Such bacteria often co-occur at oxic-anoxic gradients in aquatic and terrestrial habitats. In this paper, we present the first computational agent-based model of microbial iron cycling, between the anaerobic ferric iron (Fe

Indexed as

agent-based modellingbacterial interactioniron oxidation and reductionmodelling of mutualismShewanellaSideroxydans

Identifiers

PMID35620008
PMCPMC9115035
OpenAlexW4280564587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.