Evidence map›Paper›PMID 35618846›Full record

ArticleNature genetics2022

Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells.

Kunhua Qin, Peng Huang, Ruopeng Feng, Cheryl A Keller, Scott A Peslak, Eugene Khandros, Megan S Saari, Xianjiang Lan, Thiyagaraj Mayuranathan, Phillip A Doerfler and 7 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. New Gene Therapy Strategy for β-Thalassemia.Stem cell reviews and reports · 2026
    Review
  4. Article
  5. Dissecting polycomb complexes for enhanced fetal hemoglobin production.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025
    Review
  8. Review
  9. Review
  10. Article
  11. MYB represses ζ-globin expression through upregulating ETO2.Acta biochimica et biophysica Sinica · 2025
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Transcriptional Repressor BCL11A in Erythroid Cells.Advances in experimental medicine and biology · 2024
    Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Kunhua QinDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Peng HuangDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ruopeng FengDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Cheryl A KellerDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0001-6594-0245
Scott A PeslakDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-1483-1545
Eugene KhandrosDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Megan S SaariDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Xianjiang LanDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Thiyagaraj MayuranathanDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Phillip A DoerflerDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-7566-9073
Osheiza AbdulmalikDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-2497-4291
Belinda GiardineDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-4681-1074
Stella T ChouDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4333-6965
Junwei ShiDepartment of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-8427-6316
Ross C HardisonDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-4084-7516
Mitchell J WeissDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-2460-3036
Gerd A BlobelDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. blobel@chop.edu.ORCID http://orcid.org/0000-0002-0714-9612
Children's Hospital of Philadelphia · USSt. Jude Children's Research Hospital · USPennsylvania State University · USUniversity of Pennsylvania · US

Funding

VIROSOME/PROTEOLIPOSOME MEDIATED GENE TRANSFERP01HL053749 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEISS, MITCHELL J · 1994 to 2022
$43.6M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
Regulation of Hemoglobin SwitchingR01HL119479 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 2013 to 2026
$8.0M
RED CELL HEMOGLOBIN RESEARCH TRAINING PROGRAMT32HL007150 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI STELLA T CHOU, Mortimer Poncz · 1985 to 2026
$7.4M
VISION: ValIdated Systematic IntegratiON of epigenomic dataR24DK106766 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2016 to 2020
$6.2M
PedGeneRx - Admin Supplement to Base Editing and Prime Editing for Sickle Cell Disease R01R01HL156647 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Agnieszka Czechowicz, DAVID R LIU · 2021 to 2026
$4.8M
RH genotype matched red cell transfusions for patients with sickle cell diseaseR01HL147879 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI CHOU, STELLA T · 2019 to 2022
$3.4M
Cellular Signaling Pathways in the Regulation of Fetal Hemoglobin for Treatment of Sickle Cell DiseaseK08DK129716 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI PESLAK, SCOTT ALAN · 2021 to 2025
$836k
Mapping Gamma Globin Regulatory ElementsF32DK118822 · NIDDK · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DOERFLER, PHILLIP A · 2018 to 2020
$192k
NHLBI NIH HHS P01 HL053749NHLBI NIH HHS R01 HL119479NHLBI NIH HHS R01 HL147879NHLBI NIH HHS R01 HL156647NHLBI NIH HHS T32 HL007150NIDDK NIH HHS F32 DK118822NIDDK NIH HHS K08 DK129716NIDDK NIH HHS R24 DK106766NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

The mechanisms by which the fetal-type β-globin-like genes HBG1 and HBG2 are silenced in adult erythroid precursor cells remain a fundamental question in human biology and have therapeutic relevance to sickle cell disease and β-thalassemia. Here, we identify via a CRISPR-Cas9 genetic screen two members of the NFI transcription factor family-NFIA and NFIX-as HBG1/2 repressors. NFIA and NFIX are expressed at elevated levels in adult erythroid cells compared with fetal cells, and function cooperatively to repress HBG1/2 in cultured cells and in human-to-mouse xenotransplants. Genomic profiling, genome editing and DNA binding assays demonstrate that the potent concerted activity of NFIA and NFIX is explained in part by their ability to stimulate the expression of BCL11A, a known silencer of the HBG1/2 genes, and in part by directly repressing the HBG1/2 genes. Thus, NFI factors emerge as versatile regulators of the fetal-to-adult switch in β-globin production.

Indexed as

Fetal Hemoglobingamma-GlobinsAnimalsbeta-GlobinsCarrier ProteinsErythroid CellsGene EditingMiceNFI Transcription FactorsTranscription Factorsbeta-GlobinsCarrier ProteinsFetal Hemoglobingamma-GlobinsNFI Transcription FactorsNfix protein, mouseTranscription Factors

Identifiers

PMID35618846
PMCPMC9203980
OpenAlexW4281550335

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.