Evidence map›Paper›PMID 35618430›Full record

ArticleRNA (New York, N.Y.)2022

Type III-A CRISPR systems as a versatile gene knockdown technology.

Walter T Woodside, Nikita Vantsev, Ryan J Catchpole, Sandra C Garrett, Sara Olson, Brenton R Graveley, Michael P Terns

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. CRISPR technologies for genome, epigenome and transcriptome editing.Nature reviews. Molecular cell biology · 2024
    Review
  4. Article
  5. Article
  6. CRISPR-based engineering of RNA viruses.bioRxiv : the preprint server for biology · 2023
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Walter T WoodsideDepartment of Microbiology, University of Georgia, Athens, Georgia 30602, USA.
Nikita VantsevDepartment of Genetics, University of Georgia, Athens, Georgia 30602, USA.
Ryan J CatchpoleDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Sandra C GarrettDepartment of Genetics and Genome Sciences, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut 06030, USA.
Sara OlsonDepartment of Genetics and Genome Sciences, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut 06030, USA.
Brenton R GraveleyDepartment of Genetics and Genome Sciences, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut 06030, USA.
Michael P TernsDepartment of Microbiology, University of Georgia, Athens, Georgia 30602, USA.ORCID 0000-0001-8330-1789

Funding

Genomic Analysis of Nucleic Acid TransactionsR35GM118140 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2016 to 2025
$6.8M
CRISPR Capture, Destroy, and Counter-Attack MechanismsR35GM118160 · NIGMS · UNIVERSITY OF GEORGIA · PI TERNS, MICHAEL P · 2016 to 2025
$5.8M
NIGMS NIH HHS R35 GM118140NIGMS NIH HHS R35 GM118160
6 · The paper itself

Abstract

CRISPR-Cas systems are functionally diverse prokaryotic antiviral defense systems, which encompass six distinct types (I-VI) that each encode different effector Cas nucleases with distinct nucleic acid cleavage specificities. By harnessing the unique attributes of the various CRISPR-Cas systems, a range of innovative CRISPR-based DNA and RNA targeting tools and technologies have been developed. Here, we exploit the ability of type III-A CRISPR-Cas systems to carry out RNA-guided and sequence-specific target RNA cleavage for establishment of research tools for post-transcriptional control of gene expression. Type III-A systems from three bacterial species (

Indexed as

CRISPR-Cas SystemsEscherichia coliGene Knockdown TechniquesRNAStaphylococcus epidermidisTechnologyRNACasCRISPRgene knockdownmRNA degradationRNAitype III

Identifiers

PMID35618430
PMCPMC9297841

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.