Evidence map›Paper›PMID 35616528›Full record

ArticleeLife2022

Hybridization alters the shape of the genotypic fitness landscape, increasing access to novel fitness peaks during adaptive radiation.

Austin H Patton, Emilie J Richards, Katelyn J Gould, Logan K Buie, Christopher H Martin

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Austin H PattonDepartment of Integrative Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0003-1286-9005
Emilie J RichardsDepartment of Integrative Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0003-2734-6020
Katelyn J GouldDepartment of Biology, University of North Carolina, Chapel Hill, United States.ORCID 0000-0001-5207-1810
Logan K BuieDepartment of Biology, University of North Carolina, Chapel Hill, United States.
Christopher H MartinDepartment of Integrative Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0001-7989-9124
Museum of Vertebrate Zoology · US

Funding

Discovery and functional analysis of novel candidate genes and variants underlying craniofacial diversification in Cyprinodon pupfishesR01DE027052 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Christopher Herbert Martin · 2018 to 2026
$3.0M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIDCR NIH HHS R01 DE027052NIH HHS S10 OD018174
6 · The paper itself

Abstract

Estimating the complex relationship between fitness and genotype or phenotype (i.e. the adaptive landscape) is one of the central goals of evolutionary biology. However, adaptive walks connecting genotypes to organismal fitness, speciation, and novel ecological niches are still poorly understood and processes for surmounting fitness valleys remain controversial. One outstanding system for addressing these connections is a recent adaptive radiation of ecologically and morphologically novel pupfishes (a generalist, molluscivore, and scale-eater) endemic to San Salvador Island, Bahamas. We leveraged whole-genome sequencing of 139 hybrids from two independent field fitness experiments to identify the genomic basis of fitness, estimate genotypic fitness networks, and measure the accessibility of adaptive walks on the fitness landscape. We identified 132 single nucleotide polymorphisms (SNPs) that were significantly associated with fitness in field enclosures. Six out of the 13 regions most strongly associated with fitness contained differentially expressed genes and fixed SNPs between trophic specialists; one gene (

Indexed as

Genetic SpeciationKillifishesAnimalsEcosystemGenetic FitnessGenotypeHybridization, Geneticadaptive radiationCyprinodonde novo mutationevolutionary biologyfitness landscapegeneticsgenomicsgenotypic fitness networkintrogression

Identifiers

PMID35616528
PMCPMC9135402
OpenAlexW4281550368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.