Evidence map›Paper›PMID 35615298›Full record

ArticleOpen forum infectious diseases2022

Confirmed Severe Acute Respiratory Syndrome Coronavirus 2 Reinfections After a Second Wave With Predominance of Lambda in Lima and Callao, Peru.

Luis Pampa-Espinoza, Carlos Padilla-Rojas, Javier Silva-Valencia, Victor Jimenez-Vasquez, Iris Silva, Orson Mestanza, Priscila Lope Pari, Omar Cáceres, Henry Bailón-Calderón, Luis Bárcena-Flores and 11 more

Abstract read
In one paragraph

Article in Open forum infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Luis Pampa-EspinozaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-2392-587X
Carlos Padilla-RojasInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-0562-0431
Javier Silva-ValenciaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-5982-2821
Victor Jimenez-VasquezInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0001-6547-6999
Iris SilvaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0001-7290-9254
Orson MestanzaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0001-7268-0496
Priscila Lope PariInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-7439-4351
Omar CáceresInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0003-1529-2475
Henry Bailón-CalderónInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-9593-6092
Luis Bárcena-FloresInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0001-8776-8888
Marco GalarzaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-6547-2354
María García MendozaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-2185-5038
Ronnie GavilánInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0003-1437-5607
Nancy Rojas SerranoInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-3194-8043
Miryam Palomino RodriguezInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-1236-4114
Maribel HuaringaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0001-9247-4040
Pamela Rios MontezaInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-2488-4686
Luis OrdoñezCentro Nacional de Epidemiologia-CDC, Lima, Perú.ORCID https://orcid.org/0000-0003-2169-0162
Manuel Fernandez-NavarroInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0003-3637-2052
Natalia Vargas-HerreraInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-0948-0114
Lely SolariInstituto Nacional de Salud-INS, Lima, Perú.ORCID https://orcid.org/0000-0002-8041-8807

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Coronavirus disease 2019 (COVID-19) infection is a major public health problem in the world and reinfections are becoming more frequent. Our main objective was to describe the epidemiological, clinical, and genomic characteristics of the confirmed cases of reinfection by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in the capital of Lima and Callao, Peru. Methods: We searched in the Peruvian laboratory information system from April 2020 up to May 2021, looking for cases having 2 positive molecular tests for SARS-CoV-2 with more than 90 days between them. We performed genomic sequencing to the available pairs of samples and described the clinical characteristics, epidemiological impact, and genomic analysis of the confirmed reinfections. Results: There were 1 694 164 people with a positive diagnostic test for SARS-CoV-2 in Lima/Callao during the study period. Of these, 1695 had 2 positive molecular tests with more than 90 days between them. Two hundred eleven had both samples available for genomic analysis according to our selection criteria, and these were retrieved and submitted to sequencing. Thirty cases were confirmed to be SARS-CoV-2 reinfections with 2 different lineages in the 2 episodes. The variant Lambda (C.37) was the most common during the second infection and accounted for 19 (63.3%) of the 30 cases. Conclusions: We report 30 cases of confirmed SARS-CoV-2 reinfections. The Lambda variant was the most common cause of the second infections, in concordance with its predominant circulation during Peru's second wave. This report describes the largest series of confirmed reinfections by SARS-CoV-2 in Latin America.We describe the epidemiological, clinical, and genomic characteristics of the confirmed cases of reinfection by severe acute respiratory syndrome coronavirus 2 in Lima and Callao, durante la segunda ola en Peru. The Lambda variant (C.37) was the most common cause of the second infections.

Indexed as

coronavirusPerureinfectionSARS-CoV-2SARS-CoV-2 C.37 variant

Identifiers

PMID35615298
PMCPMC9125301

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.