Evidence map›Paper›PMID 35614853›Full record

ArticleBiophysical journal2022

Structural and biophysical properties of farnesylated KRas interacting with the chaperone SmgGDS-558.

Dennis J Michalak, Bethany Unger, Ellen Lorimer, Alexander Grishaev, Carol L Williams, Frank Heinrich, Mathias Lösche

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Biophysics of cancer.Biophysical journal · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Dennis J MichalakDepartment of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania.
Bethany UngerDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin.
Ellen LorimerDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin.
Alexander GrishaevInstitute for Bioscience and Biotechnology Research, Rockville, Maryland; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland.
Carol L WilliamsDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin.
Frank HeinrichDepartment of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania; Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland. Electronic address: frank.heinrich@nist.gov.
Mathias LöscheDepartment of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania; Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland.
Medical College of Wisconsin · USNational Institute of Standards and Technology · USCarnegie Mellon University · US

Funding

Regulation of Rap1 Prenylation and Trafficking in Breast CancerR01CA188871 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI WILLIAMS, CAROL LUCILLE · 2015 to 2019
$1.7M
NCI NIH HHS R01 CA188871
6 · The paper itself

Abstract

KRas is a small GTPase and membrane-bound signaling protein. Newly synthesized KRas is post-translationally modified with a membrane-anchoring prenyl group. KRas chaperones are therapeutic targets in cancer due to their participation in trafficking oncogenic KRas to membranes. SmgGDS splice variants are chaperones for small GTPases with basic residues in their hypervariable domain (HVR), including KRas. SmgGDS-607 escorts pre-prenylated small GTPases, while SmgGDS-558 escorts prenylated small GTPases. We provide a structural description of farnesylated and fully processed KRas (KRas-FMe) in complex with SmgGDS-558 and define biophysical properties of this interaction. Surface plasmon resonance measurements on biomimetic model membranes quantified the thermodynamics of the interaction of SmgGDS with KRas, and small-angle x-ray scattering was used to characterize complexes of SmgGDS-558 and KRas-FMe structurally. Structural models were refined using Monte Carlo and molecular dynamics simulations. Our results indicate that SmgGDS-558 interacts with the HVR and the farnesylated C-terminus of KRas-FMe, but not its G-domain. Therefore, SmgGDS-558 interacts differently with prenylated KRas than prenylated RhoA, whose G-domain was found in close contact with SmgGDS-558 in a recent crystal structure. Using immunoprecipitation assays, we show that SmgGDS-558 binds the GTP-bound, GDP-bound, and nucleotide-free forms of farnesylated and fully processed KRas in cells, consistent with SmgGDS-558 not engaging the G-domain of KRas. We found that the dissociation constant, K

Indexed as

Guanine Nucleotide Exchange FactorsMonomeric GTP-Binding ProteinsGenes, rasGuanosine TriphosphateMolecular ChaperonesGuanine Nucleotide Exchange FactorsGuanosine TriphosphateMolecular ChaperonesMonomeric GTP-Binding Proteins

Identifiers

PMID35614853
PMCPMC9617131
OpenAlexW4281487795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.